Hb_061195_020

Information

Type -
Description -
Location Contig61195: 19409-24060
Sequence    

Annotation

kegg
ID pss:102454723
description uncharacterized LOC102454723
nr
ID XP_005369997.1
description PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
swissprot
ID Q71H73
description Histone H3.3 OS=Vitis vinifera PE=2 SV=3
trembl
ID A0A0E0G6B1
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone h3-like centromeric protein cse4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51015: 19408-20741 , PASA_asmbl_51016: 20025-20270 , PASA_asmbl_51017: 21089-22793 , PASA_asmbl_51018: 21089-22786 , PASA_asmbl_51019: 21441-22607 , PASA_asmbl_51020: 21441-22791
cDNA
(Sanger)
(ID:Location)		 002_B18.ab1: 21674-22784 , 002_N04.ab1: 21694-22793 , 005_G01.ab1: 21532-22791 , 017_L11.ab1: 21706-22784 , 018_C10.ab1: 21847-22742 , 024_D02.ab1: 21738-22786 , 026_L24.ab1: 21620-22753 , 027_J03.ab1: 21558-22791 , 030_C03.ab1: 21643-22791 , 035_E06.ab1: 21557-22784 , 038_N02.ab1: 21531-22791 , 048_O02.ab1: 21512-22784

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061195_020 0.0 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
2 Hb_015807_100 0.0936141255 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_029904_030 0.1056961868 - - aspartate aminotransferase, putative [Ricinus communis]
4 Hb_000465_230 0.1120427942 - - PREDICTED: transcriptional regulator ATRX homolog [Jatropha curcas]
5 Hb_007850_080 0.1152691871 - - PREDICTED: auxilin-like protein 1 isoform X1 [Jatropha curcas]
6 Hb_000525_020 0.1163763925 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_033642_080 0.1172843497 - - V-type proton ATPase subunit E [Hevea brasiliensis]
8 Hb_013399_050 0.1197889263 - - PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1-like isoform X2 [Jatropha curcas]
9 Hb_000327_060 0.120394406 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
10 Hb_000331_470 0.1211935989 - - PREDICTED: uncharacterized protein LOC105136689 [Populus euphratica]
11 Hb_002304_160 0.1218018303 - - PREDICTED: nudix hydrolase 15, mitochondrial-like isoform X1 [Jatropha curcas]
12 Hb_007192_100 0.122483744 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
13 Hb_006153_110 0.1225003013 - - dimethylaniline monooxygenase, putative [Ricinus communis]
14 Hb_011618_060 0.1226635617 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
15 Hb_002851_020 0.1233439033 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
16 Hb_001545_160 0.123484557 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC102615208 isoform X1 [Citrus sinensis]
17 Hb_008226_080 0.1251883151 - - Protein LRP16, putative [Ricinus communis]
18 Hb_006478_160 0.1263180595 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
19 Hb_000731_190 0.1287015481 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
20 Hb_158445_010 0.1297100256 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_061195_020 Hb_061195_020 Hb_015807_100 Hb_015807_100 Hb_061195_020--Hb_015807_100 Hb_029904_030 Hb_029904_030 Hb_061195_020--Hb_029904_030 Hb_000465_230 Hb_000465_230 Hb_061195_020--Hb_000465_230 Hb_007850_080 Hb_007850_080 Hb_061195_020--Hb_007850_080 Hb_000525_020 Hb_000525_020 Hb_061195_020--Hb_000525_020 Hb_033642_080 Hb_033642_080 Hb_061195_020--Hb_033642_080 Hb_000115_230 Hb_000115_230 Hb_015807_100--Hb_000115_230 Hb_007192_100 Hb_007192_100 Hb_015807_100--Hb_007192_100 Hb_000450_130 Hb_000450_130 Hb_015807_100--Hb_000450_130 Hb_000349_290 Hb_000349_290 Hb_015807_100--Hb_000349_290 Hb_001172_120 Hb_001172_120 Hb_015807_100--Hb_001172_120 Hb_015807_100--Hb_029904_030 Hb_000111_330 Hb_000111_330 Hb_029904_030--Hb_000111_330 Hb_002798_050 Hb_002798_050 Hb_029904_030--Hb_002798_050 Hb_000684_270 Hb_000684_270 Hb_029904_030--Hb_000684_270 Hb_004871_020 Hb_004871_020 Hb_029904_030--Hb_004871_020 Hb_001633_030 Hb_001633_030 Hb_029904_030--Hb_001633_030 Hb_013399_050 Hb_013399_050 Hb_000465_230--Hb_013399_050 Hb_002217_020 Hb_002217_020 Hb_000465_230--Hb_002217_020 Hb_065525_090 Hb_065525_090 Hb_000465_230--Hb_065525_090 Hb_001825_060 Hb_001825_060 Hb_000465_230--Hb_001825_060 Hb_012107_060 Hb_012107_060 Hb_000465_230--Hb_012107_060 Hb_005656_100 Hb_005656_100 Hb_007850_080--Hb_005656_100 Hb_003442_070 Hb_003442_070 Hb_007850_080--Hb_003442_070 Hb_007850_080--Hb_033642_080 Hb_008226_080 Hb_008226_080 Hb_007850_080--Hb_008226_080 Hb_004453_080 Hb_004453_080 Hb_007850_080--Hb_004453_080 Hb_002631_180 Hb_002631_180 Hb_007850_080--Hb_002631_180 Hb_000331_470 Hb_000331_470 Hb_000525_020--Hb_000331_470 Hb_000525_020--Hb_004871_020 Hb_091433_020 Hb_091433_020 Hb_000525_020--Hb_091433_020 Hb_001863_430 Hb_001863_430 Hb_000525_020--Hb_001863_430 Hb_000525_020--Hb_000684_270 Hb_003787_010 Hb_003787_010 Hb_000525_020--Hb_003787_010 Hb_033642_080--Hb_091433_020 Hb_004567_120 Hb_004567_120 Hb_033642_080--Hb_004567_120 Hb_000496_120 Hb_000496_120 Hb_033642_080--Hb_000496_120 Hb_000417_360 Hb_000417_360 Hb_033642_080--Hb_000417_360 Hb_006478_150 Hb_006478_150 Hb_033642_080--Hb_006478_150 Hb_180074_010 Hb_180074_010 Hb_033642_080--Hb_180074_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.9408 135.76 85.476 74.053 31.7903 53.9192
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
220.906 314.414 137.081 100.17 74.5185

CAGE analysis