Hb_001189_140

Information

Type -
Description -
Location Contig1189: 119704-123107
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05602: 105802-123109 , PASA_asmbl_05603: 105802-123109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_140 0.0 - - -
2 Hb_000363_210 0.1096067439 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
3 Hb_001892_020 0.1150503532 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_003376_350 0.1165916091 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
5 Hb_165026_020 0.1237337816 transcription factor TF Family: NAC hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
6 Hb_010883_090 0.1243512474 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
7 Hb_000230_390 0.1245324603 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
8 Hb_001159_110 0.12881019 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
9 Hb_003994_060 0.1290436023 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
10 Hb_001825_060 0.1300268564 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
11 Hb_115241_010 0.130868857 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
12 Hb_000049_310 0.1318350458 - - Myosin-J heavy chain, partial [Glycine soja]
13 Hb_001314_020 0.1321955346 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
14 Hb_000840_250 0.1351169836 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_001856_200 0.1357185321 - - Esterase PIR7B, putative [Ricinus communis]
16 Hb_000975_360 0.136229805 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002217_020 0.1380879305 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
18 Hb_000189_560 0.1389425241 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
19 Hb_004907_110 0.1393115047 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
20 Hb_004994_140 0.1393215313 - - PREDICTED: digalactosyldiacylglycerol synthase 2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001189_140 Hb_001189_140 Hb_000363_210 Hb_000363_210 Hb_001189_140--Hb_000363_210 Hb_001892_020 Hb_001892_020 Hb_001189_140--Hb_001892_020 Hb_003376_350 Hb_003376_350 Hb_001189_140--Hb_003376_350 Hb_165026_020 Hb_165026_020 Hb_001189_140--Hb_165026_020 Hb_010883_090 Hb_010883_090 Hb_001189_140--Hb_010883_090 Hb_000230_390 Hb_000230_390 Hb_001189_140--Hb_000230_390 Hb_022256_020 Hb_022256_020 Hb_000363_210--Hb_022256_020 Hb_000983_090 Hb_000983_090 Hb_000363_210--Hb_000983_090 Hb_001104_170 Hb_001104_170 Hb_000363_210--Hb_001104_170 Hb_002217_170 Hb_002217_170 Hb_000363_210--Hb_002217_170 Hb_003082_010 Hb_003082_010 Hb_000363_210--Hb_003082_010 Hb_004907_110 Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_002631_060 Hb_002631_060 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_001892_020--Hb_010883_090 Hb_003376_350--Hb_004907_110 Hb_003376_350--Hb_002631_060 Hb_000926_330 Hb_000926_330 Hb_003376_350--Hb_000926_330 Hb_004994_140 Hb_004994_140 Hb_003376_350--Hb_004994_140 Hb_000189_560 Hb_000189_560 Hb_003376_350--Hb_000189_560 Hb_003376_350--Hb_007532_030 Hb_003687_240 Hb_003687_240 Hb_165026_020--Hb_003687_240 Hb_040575_010 Hb_040575_010 Hb_165026_020--Hb_040575_010 Hb_165026_020--Hb_010883_090 Hb_165026_020--Hb_001892_020 Hb_165026_020--Hb_000230_390 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_000805_020 Hb_000805_020 Hb_010883_090--Hb_000805_020 Hb_010883_090--Hb_003687_240 Hb_010883_090--Hb_004907_110 Hb_007508_090 Hb_007508_090 Hb_000230_390--Hb_007508_090 Hb_000840_250 Hb_000840_250 Hb_000230_390--Hb_000840_250 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_000230_390--Hb_007532_030 Hb_001014_030 Hb_001014_030 Hb_000230_390--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000230_390--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.50429 22.3847 8.84542 7.76559 9.90575 8.32032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.814 16.0739 26.7993 11.9722 3.18424

CAGE analysis