Hb_165026_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig165026: 3454-5745
Sequence    

Annotation

kegg
ID rcu:RCOM_1340940
description arv1, putative
nr
ID XP_006375399.1
description hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
swissprot
ID Q54GD9
description Protein arv1 homolog OS=Dictyostelium discoideum GN=arv1 PE=3 SV=1
trembl
ID U5FTA6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165026_020 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0014s10300g [Populus trichocarpa]
2 Hb_003687_240 0.1077509394 - - PREDICTED: cryptochrome-1 [Jatropha curcas]
3 Hb_040575_010 0.1112308431 - - PREDICTED: uncharacterized protein LOC105637675 [Jatropha curcas]
4 Hb_010883_090 0.1152623948 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
5 Hb_001892_020 0.1163401446 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_001189_140 0.1237337816 - - -
7 Hb_000230_390 0.1292968611 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
8 Hb_002631_060 0.1313832726 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
9 Hb_001898_220 0.131668305 - - PREDICTED: regulator of nonsense transcripts UPF3-like isoform X1 [Jatropha curcas]
10 Hb_001635_060 0.1345861125 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
11 Hb_001159_110 0.1359900057 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
12 Hb_000777_030 0.1382939159 - - histone h2a, putative [Ricinus communis]
13 Hb_004907_110 0.1401888195 - - PREDICTED: BTB/POZ and MATH domain-containing protein 3 isoform X1 [Jatropha curcas]
14 Hb_004607_030 0.1408017974 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]
15 Hb_001314_020 0.1412359497 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
16 Hb_005147_090 0.1428790739 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
17 Hb_007532_030 0.1440505197 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
18 Hb_001123_230 0.1467037958 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
19 Hb_001519_050 0.1467350466 - - PREDICTED: protein RMD5 homolog A-like [Jatropha curcas]
20 Hb_000840_250 0.1470843113 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_165026_020 Hb_165026_020 Hb_003687_240 Hb_003687_240 Hb_165026_020--Hb_003687_240 Hb_040575_010 Hb_040575_010 Hb_165026_020--Hb_040575_010 Hb_010883_090 Hb_010883_090 Hb_165026_020--Hb_010883_090 Hb_001892_020 Hb_001892_020 Hb_165026_020--Hb_001892_020 Hb_001189_140 Hb_001189_140 Hb_165026_020--Hb_001189_140 Hb_000230_390 Hb_000230_390 Hb_165026_020--Hb_000230_390 Hb_003687_240--Hb_010883_090 Hb_002631_060 Hb_002631_060 Hb_003687_240--Hb_002631_060 Hb_000805_020 Hb_000805_020 Hb_003687_240--Hb_000805_020 Hb_007747_200 Hb_007747_200 Hb_003687_240--Hb_007747_200 Hb_000696_040 Hb_000696_040 Hb_003687_240--Hb_000696_040 Hb_021596_040 Hb_021596_040 Hb_003687_240--Hb_021596_040 Hb_009178_030 Hb_009178_030 Hb_040575_010--Hb_009178_030 Hb_000000_250 Hb_000000_250 Hb_040575_010--Hb_000000_250 Hb_000953_020 Hb_000953_020 Hb_040575_010--Hb_000953_020 Hb_000086_400 Hb_000086_400 Hb_040575_010--Hb_000086_400 Hb_001898_220 Hb_001898_220 Hb_040575_010--Hb_001898_220 Hb_001635_060 Hb_001635_060 Hb_040575_010--Hb_001635_060 Hb_010883_090--Hb_002631_060 Hb_003994_060 Hb_003994_060 Hb_010883_090--Hb_003994_060 Hb_010883_090--Hb_000805_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_001892_020--Hb_004907_110 Hb_000280_080 Hb_000280_080 Hb_001892_020--Hb_000280_080 Hb_007532_030 Hb_007532_030 Hb_001892_020--Hb_007532_030 Hb_001892_020--Hb_002631_060 Hb_001178_140 Hb_001178_140 Hb_001892_020--Hb_001178_140 Hb_000363_210 Hb_000363_210 Hb_001189_140--Hb_000363_210 Hb_001189_140--Hb_001892_020 Hb_003376_350 Hb_003376_350 Hb_001189_140--Hb_003376_350 Hb_001189_140--Hb_010883_090 Hb_001189_140--Hb_000230_390 Hb_007508_090 Hb_007508_090 Hb_000230_390--Hb_007508_090 Hb_000840_250 Hb_000840_250 Hb_000230_390--Hb_000840_250 Hb_001159_110 Hb_001159_110 Hb_000230_390--Hb_001159_110 Hb_000230_390--Hb_007532_030 Hb_001014_030 Hb_001014_030 Hb_000230_390--Hb_001014_030 Hb_003371_090 Hb_003371_090 Hb_000230_390--Hb_003371_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.901887 2.63461 0.691372 1.48369 1.35531 2.61025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94173 2.3891 4.3257 1.70471 0.299222

CAGE analysis