Hb_010897_030

Information

Type -
Description -
Location Contig10897: 49294-49932
Sequence    

Annotation

kegg
ID rcu:RCOM_0864530
description hypothetical protein
nr
ID XP_002519819.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O49686
description Abscisic acid receptor PYR1 OS=Arabidopsis thaliana GN=PYR1 PE=1 SV=1
trembl
ID B9S1F4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0864530 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02708: 48909-49890
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010897_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000635_140 0.1234599932 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
3 Hb_002603_060 0.1276441195 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
4 Hb_001123_210 0.1353033139 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
5 Hb_023536_010 0.1414516499 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
6 Hb_029904_040 0.1424063609 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
7 Hb_000896_120 0.1424839828 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
8 Hb_002798_050 0.1445836318 - - l-allo-threonine aldolase, putative [Ricinus communis]
9 Hb_009493_010 0.1626354523 - - Minor allergen Alt a, putative [Ricinus communis]
10 Hb_152910_020 0.1634032492 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
11 Hb_015807_100 0.1684829262 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_010050_050 0.1692318078 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
13 Hb_050806_010 0.17076535 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
14 Hb_000363_140 0.1711354205 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
15 Hb_000027_150 0.1733101602 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_000905_200 0.1735555219 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
17 Hb_000099_130 0.1742972017 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
18 Hb_029243_040 0.1743792164 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
19 Hb_000450_130 0.1767010973 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_003893_090 0.1775912732 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]

Gene co-expression network

sample Hb_010897_030 Hb_010897_030 Hb_000635_140 Hb_000635_140 Hb_010897_030--Hb_000635_140 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_001123_210 Hb_001123_210 Hb_010897_030--Hb_001123_210 Hb_023536_010 Hb_023536_010 Hb_010897_030--Hb_023536_010 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120 Hb_013839_010 Hb_013839_010 Hb_000635_140--Hb_013839_010 Hb_000635_140--Hb_023536_010 Hb_009493_010 Hb_009493_010 Hb_000635_140--Hb_009493_010 Hb_023732_060 Hb_023732_060 Hb_000635_140--Hb_023732_060 Hb_004994_260 Hb_004994_260 Hb_000635_140--Hb_004994_260 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_002774_050 Hb_002774_050 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_007192_100 Hb_007192_100 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_023536_010--Hb_009493_010 Hb_003893_090 Hb_003893_090 Hb_023536_010--Hb_003893_090 Hb_002798_060 Hb_002798_060 Hb_023536_010--Hb_002798_060 Hb_001329_210 Hb_001329_210 Hb_023536_010--Hb_001329_210 Hb_009486_190 Hb_009486_190 Hb_023536_010--Hb_009486_190 Hb_029904_040--Hb_152910_020 Hb_050806_010 Hb_050806_010 Hb_029904_040--Hb_050806_010 Hb_001005_080 Hb_001005_080 Hb_029904_040--Hb_001005_080 Hb_000389_080 Hb_000389_080 Hb_029904_040--Hb_000389_080 Hb_004449_200 Hb_004449_200 Hb_029904_040--Hb_004449_200 Hb_000364_030 Hb_000364_030 Hb_029904_040--Hb_000364_030 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9064 24.973 3.91704 36.5331 8.8284 11.1937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.5766 77.5784 52.0978 13.4855 1.83815

CAGE analysis