Hb_002603_060

Information

Type -
Description -
Location Contig2603: 34735-35082
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06820g
description POPTRDRAFT_765569; hypothetical protein
nr
ID XP_012087513.1
description PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
swissprot
ID O04211
description Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1
trembl
ID A0A067LKD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01274 PE=4 SV=1
Gene Ontology
ID GO:0042803
description protein early flowering 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 044_L04.ab1: 34492-35154

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002603_060 0.0 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
2 Hb_029904_040 0.1027359261 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
3 Hb_000789_110 0.11312997 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
4 Hb_120823_010 0.1147302369 - - -
5 Hb_000300_390 0.1165571971 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
6 Hb_152910_020 0.1211854985 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
7 Hb_002316_120 0.1247495606 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
8 Hb_007304_070 0.1261415477 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_010897_030 0.1276441195 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000896_120 0.1282476927 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
11 Hb_050806_010 0.1305021336 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
12 Hb_001017_070 0.13106385 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005663_120 0.1325367592 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
14 Hb_183086_040 0.1351616209 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
15 Hb_000836_140 0.1367430802 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
16 Hb_000692_020 0.1389784398 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
17 Hb_000389_080 0.1398419941 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
18 Hb_012539_020 0.1418536139 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
19 Hb_000820_130 0.1438882206 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
20 Hb_001377_380 0.1442823362 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_002603_060 Hb_002603_060 Hb_029904_040 Hb_029904_040 Hb_002603_060--Hb_029904_040 Hb_000789_110 Hb_000789_110 Hb_002603_060--Hb_000789_110 Hb_120823_010 Hb_120823_010 Hb_002603_060--Hb_120823_010 Hb_000300_390 Hb_000300_390 Hb_002603_060--Hb_000300_390 Hb_152910_020 Hb_152910_020 Hb_002603_060--Hb_152910_020 Hb_002316_120 Hb_002316_120 Hb_002603_060--Hb_002316_120 Hb_029904_040--Hb_152910_020 Hb_050806_010 Hb_050806_010 Hb_029904_040--Hb_050806_010 Hb_001005_080 Hb_001005_080 Hb_029904_040--Hb_001005_080 Hb_000389_080 Hb_000389_080 Hb_029904_040--Hb_000389_080 Hb_004449_200 Hb_004449_200 Hb_029904_040--Hb_004449_200 Hb_000364_030 Hb_000364_030 Hb_029904_040--Hb_000364_030 Hb_000789_110--Hb_002316_120 Hb_000270_720 Hb_000270_720 Hb_000789_110--Hb_000270_720 Hb_000789_110--Hb_000300_390 Hb_000820_130 Hb_000820_130 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_000789_110--Hb_004007_180 Hb_120823_010--Hb_000300_390 Hb_006588_080 Hb_006588_080 Hb_120823_010--Hb_006588_080 Hb_120823_010--Hb_000389_080 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000300_390--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_003185_050 Hb_003185_050 Hb_152910_020--Hb_003185_050 Hb_152910_020--Hb_001005_080 Hb_007192_100 Hb_007192_100 Hb_152910_020--Hb_007192_100 Hb_000115_230 Hb_000115_230 Hb_152910_020--Hb_000115_230 Hb_152910_020--Hb_050806_010 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_001377_380 Hb_002316_120--Hb_012539_020 Hb_002316_120--Hb_004007_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.55036 3.27928 1.00365 5.79511 1.62961 2.02547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7329 19.5534 8.23744 3.51233 1.73188

CAGE analysis