Hb_002774_050

Information

Type -
Description -
Location Contig2774: 18328-23742
Sequence    

Annotation

kegg
ID rcu:RCOM_1034980
description hypothetical protein
nr
ID XP_012067857.1
description PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
swissprot
ID Q9C9R6
description Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana GN=APUM7 PE=3 SV=2
trembl
ID A0A067LA38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15777 PE=4 SV=1
Gene Ontology
ID GO:0003723
description pumilio homolog chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28961: 20329-22163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002774_050 0.0 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
2 Hb_050806_010 0.098370349 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
3 Hb_007192_100 0.1066055387 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
4 Hb_001314_040 0.121660649 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
5 Hb_000178_120 0.1233523297 - - PREDICTED: histone H2B [Jatropha curcas]
6 Hb_001357_120 0.1256089688 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
7 Hb_010402_050 0.1268870586 - - -
8 Hb_152910_020 0.1274101769 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
9 Hb_000099_130 0.1295284441 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
10 Hb_000175_030 0.129990103 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
11 Hb_001005_080 0.1304765673 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
12 Hb_005663_120 0.1324970869 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
13 Hb_000928_130 0.1325335985 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_005278_040 0.1347182025 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
15 Hb_005527_040 0.1353243798 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
16 Hb_008948_100 0.1363167488 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
17 Hb_002260_030 0.1364422636 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
18 Hb_007441_260 0.1371403309 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
19 Hb_000027_150 0.1375991367 - - mitochondrial carrier protein, putative [Ricinus communis]
20 Hb_001519_030 0.1408918126 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002774_050 Hb_002774_050 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_007192_100 Hb_007192_100 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_000178_120 Hb_000178_120 Hb_002774_050--Hb_000178_120 Hb_001357_120 Hb_001357_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_000027_150 Hb_000027_150 Hb_050806_010--Hb_000027_150 Hb_029904_040 Hb_029904_040 Hb_050806_010--Hb_029904_040 Hb_152910_020 Hb_152910_020 Hb_050806_010--Hb_152910_020 Hb_005663_120 Hb_005663_120 Hb_050806_010--Hb_005663_120 Hb_050806_010--Hb_007192_100 Hb_005527_040 Hb_005527_040 Hb_050806_010--Hb_005527_040 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001157_010 Hb_001157_010 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_000802_100 Hb_000802_100 Hb_001314_040--Hb_000802_100 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_000178_120--Hb_010402_050 Hb_002042_080 Hb_002042_080 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060 Hb_001519_030 Hb_001519_030 Hb_001357_120--Hb_001519_030 Hb_000836_130 Hb_000836_130 Hb_001357_120--Hb_000836_130 Hb_002260_030 Hb_002260_030 Hb_001357_120--Hb_002260_030 Hb_000424_210 Hb_000424_210 Hb_001357_120--Hb_000424_210 Hb_000196_080 Hb_000196_080 Hb_001357_120--Hb_000196_080 Hb_001218_040 Hb_001218_040 Hb_001357_120--Hb_001218_040 Hb_003581_220 Hb_003581_220 Hb_010402_050--Hb_003581_220 Hb_010402_050--Hb_050806_010 Hb_010402_050--Hb_152910_020 Hb_001172_100 Hb_001172_100 Hb_010402_050--Hb_001172_100 Hb_032969_030 Hb_032969_030 Hb_010402_050--Hb_032969_030 Hb_000318_160 Hb_000318_160 Hb_010402_050--Hb_000318_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.328858 0.515532 0.639689 1.0814 0.145059 0.38313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.93487 2.67479 2.61484 0.569708 0.610945

CAGE analysis