Hb_002260_030

Information

Type -
Description -
Location Contig2260: 16586-19956
Sequence    

Annotation

kegg
ID sot:102585501
description putative glutamine amidotransferase YLR126C-like
nr
ID XP_012081389.1
description PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
swissprot
ID Q12288
description Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1
trembl
ID A0A067K4L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18770 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutamine amidotransferase ylr126c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23499: 16428-19966
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002260_030 0.0 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
2 Hb_001357_120 0.1182937237 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
3 Hb_002774_050 0.1364422636 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
4 Hb_000914_170 0.1385982542 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
5 Hb_008948_100 0.1395616922 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
6 Hb_000175_030 0.142412332 - - Signal recognition particle, SRP54 subunit protein [Theobroma cacao]
7 Hb_000705_290 0.1474818409 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
8 Hb_000169_140 0.1478809454 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
9 Hb_000125_210 0.1480950018 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
10 Hb_001136_060 0.1488625868 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
11 Hb_161175_010 0.1522885623 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
12 Hb_050806_010 0.158868728 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
13 Hb_005527_040 0.158909315 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
14 Hb_000096_150 0.1607663627 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
15 Hb_003349_080 0.1614851778 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_001519_030 0.163632259 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
17 Hb_003581_300 0.1638329578 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
18 Hb_000928_130 0.1672192809 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_006018_060 0.1672912791 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
20 Hb_000258_330 0.1679440544 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002260_030 Hb_002260_030 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290 Hb_001519_030 Hb_001519_030 Hb_001357_120--Hb_001519_030 Hb_000836_130 Hb_000836_130 Hb_001357_120--Hb_000836_130 Hb_000424_210 Hb_000424_210 Hb_001357_120--Hb_000424_210 Hb_000196_080 Hb_000196_080 Hb_001357_120--Hb_000196_080 Hb_001218_040 Hb_001218_040 Hb_001357_120--Hb_001218_040 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_007192_100 Hb_007192_100 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_000178_120 Hb_000178_120 Hb_002774_050--Hb_000178_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_028487_030 Hb_028487_030 Hb_008948_100--Hb_028487_030 Hb_029904_030 Hb_029904_030 Hb_008948_100--Hb_029904_030 Hb_008948_100--Hb_000027_150 Hb_008948_100--Hb_002774_050 Hb_008948_100--Hb_001357_120 Hb_000673_020 Hb_000673_020 Hb_000175_030--Hb_000673_020 Hb_161175_010 Hb_161175_010 Hb_000175_030--Hb_161175_010 Hb_011021_040 Hb_011021_040 Hb_000175_030--Hb_011021_040 Hb_003880_030 Hb_003880_030 Hb_000175_030--Hb_003880_030 Hb_003462_120 Hb_003462_120 Hb_000175_030--Hb_003462_120 Hb_000175_030--Hb_007192_100 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000705_290--Hb_000272_140 Hb_000042_200 Hb_000042_200 Hb_000705_290--Hb_000042_200 Hb_001284_030 Hb_001284_030 Hb_000705_290--Hb_001284_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7954 13.3477 26.0518 49.6663 8.83169 17.2801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
178.3 81.5052 99.8443 32.7342 53.7289

CAGE analysis