Hb_028487_030

Information

Type -
Description -
Location Contig28487: 47308-52100
Sequence    

Annotation

kegg
ID rcu:RCOM_0628400
description hypothetical protein
nr
ID XP_002527773.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZU90
description F-box protein SKIP28 OS=Arabidopsis thaliana GN=SKIP28 PE=1 SV=1
trembl
ID B9SP54
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0628400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29788: 47344-47897 , PASA_asmbl_29790: 49573-52480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028487_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011671_390 0.0797656899 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
3 Hb_001616_030 0.0919730601 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
4 Hb_000680_140 0.1025426836 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
5 Hb_001218_040 0.1099788233 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
6 Hb_028486_030 0.1099865768 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
7 Hb_153112_030 0.1150264949 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
8 Hb_005211_190 0.1160341552 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
9 Hb_000668_040 0.1164286587 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
10 Hb_001160_030 0.1166977041 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
11 Hb_003349_080 0.119076814 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
12 Hb_004846_090 0.1194182334 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
13 Hb_008948_100 0.1218135609 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
14 Hb_000340_570 0.1223071074 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
15 Hb_029904_030 0.1227712992 - - aspartate aminotransferase, putative [Ricinus communis]
16 Hb_002027_400 0.1234862985 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
17 Hb_002027_210 0.1259759548 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_000334_210 0.1295018126 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
19 Hb_000210_220 0.1296015734 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
20 Hb_000027_150 0.1303350482 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_028487_030 Hb_028487_030 Hb_011671_390 Hb_011671_390 Hb_028487_030--Hb_011671_390 Hb_001616_030 Hb_001616_030 Hb_028487_030--Hb_001616_030 Hb_000680_140 Hb_000680_140 Hb_028487_030--Hb_000680_140 Hb_001218_040 Hb_001218_040 Hb_028487_030--Hb_001218_040 Hb_028486_030 Hb_028486_030 Hb_028487_030--Hb_028486_030 Hb_153112_030 Hb_153112_030 Hb_028487_030--Hb_153112_030 Hb_004846_090 Hb_004846_090 Hb_011671_390--Hb_004846_090 Hb_011671_390--Hb_001616_030 Hb_011671_390--Hb_028486_030 Hb_002999_050 Hb_002999_050 Hb_011671_390--Hb_002999_050 Hb_000069_700 Hb_000069_700 Hb_011671_390--Hb_000069_700 Hb_000563_250 Hb_000563_250 Hb_001616_030--Hb_000563_250 Hb_000240_090 Hb_000240_090 Hb_001616_030--Hb_000240_090 Hb_003579_030 Hb_003579_030 Hb_001616_030--Hb_003579_030 Hb_003376_030 Hb_003376_030 Hb_001616_030--Hb_003376_030 Hb_001160_030 Hb_001160_030 Hb_001616_030--Hb_001160_030 Hb_001616_030--Hb_153112_030 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_001396_100 Hb_001396_100 Hb_001218_040--Hb_001396_100 Hb_000224_140 Hb_000224_140 Hb_001218_040--Hb_000224_140 Hb_001904_090 Hb_001904_090 Hb_001218_040--Hb_001904_090 Hb_003349_080 Hb_003349_080 Hb_001218_040--Hb_003349_080 Hb_001218_040--Hb_001616_030 Hb_001218_040--Hb_000680_140 Hb_028486_030--Hb_000680_140 Hb_000962_040 Hb_000962_040 Hb_028486_030--Hb_000962_040 Hb_028486_030--Hb_004846_090 Hb_007220_010 Hb_007220_010 Hb_028486_030--Hb_007220_010 Hb_026549_040 Hb_026549_040 Hb_028486_030--Hb_026549_040 Hb_012675_050 Hb_012675_050 Hb_028486_030--Hb_012675_050 Hb_017948_010 Hb_017948_010 Hb_153112_030--Hb_017948_010 Hb_001633_030 Hb_001633_030 Hb_153112_030--Hb_001633_030 Hb_000173_220 Hb_000173_220 Hb_153112_030--Hb_000173_220 Hb_153112_030--Hb_004459_040 Hb_000181_300 Hb_000181_300 Hb_153112_030--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.22395 4.19977 5.1125 3.18746 4.35951 4.00255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4121 17.213 12.944 2.7151 7.27601

CAGE analysis