Hb_000914_170

Information

Type -
Description -
Location Contig914: 150980-157234
Sequence    

Annotation

kegg
ID cit:102622125
description E3 ubiquitin ligase BIG BROTHER-like
nr
ID KDP22078.1
description hypothetical protein JCGZ_25909 [Jatropha curcas]
swissprot
ID Q8L649
description E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1 SV=1
trembl
ID A0A067JGZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25909 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin ligase big brother-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62198: 151556-157142 , PASA_asmbl_62199: 155713-155849
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_170 0.0 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
2 Hb_000243_080 0.1283890258 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
3 Hb_000272_140 0.1334818502 - - Protein bem46, putative [Ricinus communis]
4 Hb_000027_150 0.1355017267 - - mitochondrial carrier protein, putative [Ricinus communis]
5 Hb_003687_150 0.1363314888 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
6 Hb_002260_030 0.1385982542 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
7 Hb_000046_100 0.1555350245 - - NADH dehydrogenase, putative [Ricinus communis]
8 Hb_000123_170 0.1564338553 - - Rab3 [Hevea brasiliensis]
9 Hb_050806_010 0.1572379729 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
10 Hb_003849_100 0.1574319194 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
11 Hb_000258_330 0.1575547986 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_000103_320 0.158044996 - - Stem-specific protein TSJT1, putative [Ricinus communis]
13 Hb_008948_100 0.158153388 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
14 Hb_002183_070 0.1593500199 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Jatropha curcas]
15 Hb_001014_170 0.1596822319 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
16 Hb_027073_050 0.160220439 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
17 Hb_003849_150 0.1604874401 - - PREDICTED: uncharacterized protein LOC105644698 [Jatropha curcas]
18 Hb_019516_080 0.1611609419 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000539_030 0.1642215721 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
20 Hb_009510_020 0.1642404293 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000914_170 Hb_000914_170 Hb_000243_080 Hb_000243_080 Hb_000914_170--Hb_000243_080 Hb_000272_140 Hb_000272_140 Hb_000914_170--Hb_000272_140 Hb_000027_150 Hb_000027_150 Hb_000914_170--Hb_000027_150 Hb_003687_150 Hb_003687_150 Hb_000914_170--Hb_003687_150 Hb_002260_030 Hb_002260_030 Hb_000914_170--Hb_002260_030 Hb_000046_100 Hb_000046_100 Hb_000914_170--Hb_000046_100 Hb_019516_080 Hb_019516_080 Hb_000243_080--Hb_019516_080 Hb_000103_320 Hb_000103_320 Hb_000243_080--Hb_000103_320 Hb_000138_170 Hb_000138_170 Hb_000243_080--Hb_000138_170 Hb_000243_080--Hb_003687_150 Hb_000243_080--Hb_000272_140 Hb_002878_010 Hb_002878_010 Hb_000272_140--Hb_002878_010 Hb_002918_290 Hb_002918_290 Hb_000272_140--Hb_002918_290 Hb_000705_290 Hb_000705_290 Hb_000272_140--Hb_000705_290 Hb_001953_090 Hb_001953_090 Hb_000272_140--Hb_001953_090 Hb_000042_200 Hb_000042_200 Hb_000272_140--Hb_000042_200 Hb_000322_140 Hb_000322_140 Hb_000272_140--Hb_000322_140 Hb_050806_010 Hb_050806_010 Hb_000027_150--Hb_050806_010 Hb_001687_040 Hb_001687_040 Hb_000027_150--Hb_001687_040 Hb_000012_100 Hb_000012_100 Hb_000027_150--Hb_000012_100 Hb_006573_220 Hb_006573_220 Hb_000027_150--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_000027_150--Hb_000181_300 Hb_004449_200 Hb_004449_200 Hb_000027_150--Hb_004449_200 Hb_027073_050 Hb_027073_050 Hb_003687_150--Hb_027073_050 Hb_008544_010 Hb_008544_010 Hb_003687_150--Hb_008544_010 Hb_002016_100 Hb_002016_100 Hb_003687_150--Hb_002016_100 Hb_162275_030 Hb_162275_030 Hb_003687_150--Hb_162275_030 Hb_001080_280 Hb_001080_280 Hb_003687_150--Hb_001080_280 Hb_001904_090 Hb_001904_090 Hb_003687_150--Hb_001904_090 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_002260_030--Hb_000705_290 Hb_021596_090 Hb_021596_090 Hb_000046_100--Hb_021596_090 Hb_000046_100--Hb_000103_320 Hb_007044_120 Hb_007044_120 Hb_000046_100--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000046_100--Hb_006831_120 Hb_001218_040 Hb_001218_040 Hb_000046_100--Hb_001218_040 Hb_028872_080 Hb_028872_080 Hb_000046_100--Hb_028872_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7616 3.67279 16.4455 29.2712 8.68099 9.44475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.7487 31.5339 39.5288 6.30172 13.3504

CAGE analysis