Hb_000138_170

Information

Type -
Description -
Location Contig138: 309677-312836
Sequence    

Annotation

kegg
ID rcu:RCOM_0503680
description hypothetical protein
nr
ID AEW43292.1
description putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
swissprot
ID Q9M2P7
description Probable plastid-lipid-associated protein 9, chloroplastic OS=Arabidopsis thaliana GN=PAP9 PE=2 SV=1
trembl
ID G9F9P3
description Putative plastid-lipid-associated protein (Fragment) OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10492: 309736-316968 , PASA_asmbl_10493: 309666-316166
cDNA
(Sanger)
(ID:Location)		 002_N22.ab1: 309688-315944 , 015_H21.ab1: 309690-310327 , 048_N15.ab1: 309666-312588

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000138_170 0.0 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
2 Hb_000243_080 0.1312456761 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
3 Hb_000826_090 0.1471138693 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
4 Hb_006442_020 0.1497434395 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
5 Hb_003894_080 0.1512361888 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
6 Hb_111985_110 0.1562170133 - - thioredoxin H-type 3 [Hevea brasiliensis]
7 Hb_019516_080 0.157050374 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003605_160 0.1579560443 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
9 Hb_000322_140 0.160787976 - - hypothetical protein RCOM_1047200 [Ricinus communis]
10 Hb_012340_050 0.1622954298 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
11 Hb_006452_110 0.1636457245 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
12 Hb_003589_080 0.1661130828 - - PREDICTED: uncharacterized protein LOC105107863 [Populus euphratica]
13 Hb_000914_170 0.1701965318 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
14 Hb_000733_080 0.1702406138 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
15 Hb_000130_100 0.1710944218 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
16 Hb_000638_170 0.172168319 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
17 Hb_000292_060 0.1733557511 - - transporter, putative [Ricinus communis]
18 Hb_000272_140 0.1741448574 - - Protein bem46, putative [Ricinus communis]
19 Hb_000826_100 0.1749993374 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
20 Hb_000705_290 0.1761422803 - - C-4 methyl sterol oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000138_170 Hb_000138_170 Hb_000243_080 Hb_000243_080 Hb_000138_170--Hb_000243_080 Hb_000826_090 Hb_000826_090 Hb_000138_170--Hb_000826_090 Hb_006442_020 Hb_006442_020 Hb_000138_170--Hb_006442_020 Hb_003894_080 Hb_003894_080 Hb_000138_170--Hb_003894_080 Hb_111985_110 Hb_111985_110 Hb_000138_170--Hb_111985_110 Hb_019516_080 Hb_019516_080 Hb_000138_170--Hb_019516_080 Hb_000243_080--Hb_019516_080 Hb_000914_170 Hb_000914_170 Hb_000243_080--Hb_000914_170 Hb_000103_320 Hb_000103_320 Hb_000243_080--Hb_000103_320 Hb_003687_150 Hb_003687_150 Hb_000243_080--Hb_003687_150 Hb_000272_140 Hb_000272_140 Hb_000243_080--Hb_000272_140 Hb_012340_050 Hb_012340_050 Hb_000826_090--Hb_012340_050 Hb_002411_040 Hb_002411_040 Hb_000826_090--Hb_002411_040 Hb_019762_020 Hb_019762_020 Hb_000826_090--Hb_019762_020 Hb_000826_090--Hb_111985_110 Hb_079483_020 Hb_079483_020 Hb_000826_090--Hb_079483_020 Hb_000983_040 Hb_000983_040 Hb_006442_020--Hb_000983_040 Hb_000705_290 Hb_000705_290 Hb_006442_020--Hb_000705_290 Hb_000617_200 Hb_000617_200 Hb_006442_020--Hb_000617_200 Hb_161175_010 Hb_161175_010 Hb_006442_020--Hb_161175_010 Hb_002221_070 Hb_002221_070 Hb_006442_020--Hb_002221_070 Hb_011249_020 Hb_011249_020 Hb_006442_020--Hb_011249_020 Hb_001252_210 Hb_001252_210 Hb_003894_080--Hb_001252_210 Hb_000292_060 Hb_000292_060 Hb_003894_080--Hb_000292_060 Hb_000322_140 Hb_000322_140 Hb_003894_080--Hb_000322_140 Hb_000028_350 Hb_000028_350 Hb_003894_080--Hb_000028_350 Hb_003605_160 Hb_003605_160 Hb_003894_080--Hb_003605_160 Hb_006452_110 Hb_006452_110 Hb_003894_080--Hb_006452_110 Hb_021409_080 Hb_021409_080 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_006573_290 Hb_006573_290 Hb_111985_110--Hb_006573_290 Hb_027073_050 Hb_027073_050 Hb_019516_080--Hb_027073_050 Hb_019516_080--Hb_000103_320 Hb_001439_200 Hb_001439_200 Hb_019516_080--Hb_001439_200 Hb_019516_080--Hb_003687_150 Hb_000046_100 Hb_000046_100 Hb_019516_080--Hb_000046_100 Hb_000300_220 Hb_000300_220 Hb_019516_080--Hb_000300_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.88929 0.605834 5.28575 22.445 2.49365 3.80337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5729 14.5184 14.0951 2.43571 6.56142

CAGE analysis