Hb_003894_080

Information

Type -
Description -
Location Contig3894: 52350-53539
Sequence    

Annotation

kegg
ID vvi:100260883
description protein cornichon homolog 4
nr
ID XP_002279334.1
description PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
swissprot
ID Q84W04
description Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1
trembl
ID D7U7S7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00890 PE=4 SV=1
Gene Ontology
ID GO:0005622
description protein cornichon homolog 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39026: 52432-52574 , PASA_asmbl_39027: 52584-54326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003894_080 0.0 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
2 Hb_001252_210 0.1047533121 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
3 Hb_000292_060 0.1155310351 - - transporter, putative [Ricinus communis]
4 Hb_000322_140 0.1156512951 - - hypothetical protein RCOM_1047200 [Ricinus communis]
5 Hb_000028_350 0.1165666842 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
6 Hb_003605_160 0.1207832575 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
7 Hb_006452_110 0.1217536089 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
8 Hb_145880_020 0.1233187872 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
9 Hb_000336_240 0.1233916464 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
10 Hb_001437_060 0.126196815 - - PREDICTED: uncharacterized protein LOC105628058 [Jatropha curcas]
11 Hb_000563_200 0.1267944486 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
12 Hb_000638_170 0.1278350634 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
13 Hb_000733_080 0.1280506085 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
14 Hb_002303_060 0.1304960437 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002324_010 0.1308237974 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
16 Hb_000808_190 0.1310375817 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
17 Hb_002631_260 0.1311713128 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
18 Hb_148209_010 0.1320843684 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_019762_020 0.1336956117 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
20 Hb_033594_150 0.136640605 - - unknown [Lotus japonicus]

Gene co-expression network

sample Hb_003894_080 Hb_003894_080 Hb_001252_210 Hb_001252_210 Hb_003894_080--Hb_001252_210 Hb_000292_060 Hb_000292_060 Hb_003894_080--Hb_000292_060 Hb_000322_140 Hb_000322_140 Hb_003894_080--Hb_000322_140 Hb_000028_350 Hb_000028_350 Hb_003894_080--Hb_000028_350 Hb_003605_160 Hb_003605_160 Hb_003894_080--Hb_003605_160 Hb_006452_110 Hb_006452_110 Hb_003894_080--Hb_006452_110 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_001252_210--Hb_000574_130 Hb_000046_350 Hb_000046_350 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_019762_020 Hb_019762_020 Hb_001252_210--Hb_019762_020 Hb_000436_030 Hb_000436_030 Hb_000292_060--Hb_000436_030 Hb_002324_010 Hb_002324_010 Hb_000292_060--Hb_002324_010 Hb_005278_040 Hb_005278_040 Hb_000292_060--Hb_005278_040 Hb_000320_330 Hb_000320_330 Hb_000292_060--Hb_000320_330 Hb_000417_260 Hb_000417_260 Hb_000292_060--Hb_000417_260 Hb_000638_170 Hb_000638_170 Hb_000292_060--Hb_000638_170 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_002878_010 Hb_002878_010 Hb_000322_140--Hb_002878_010 Hb_001953_090 Hb_001953_090 Hb_000322_140--Hb_001953_090 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_002111_040 Hb_002111_040 Hb_000028_350--Hb_002111_040 Hb_000808_190 Hb_000808_190 Hb_000028_350--Hb_000808_190 Hb_000028_350--Hb_002284_230 Hb_000363_360 Hb_000363_360 Hb_000028_350--Hb_000363_360 Hb_000563_200 Hb_000563_200 Hb_000028_350--Hb_000563_200 Hb_004672_010 Hb_004672_010 Hb_000028_350--Hb_004672_010 Hb_000826_100 Hb_000826_100 Hb_003605_160--Hb_000826_100 Hb_000189_240 Hb_000189_240 Hb_003605_160--Hb_000189_240 Hb_002303_060 Hb_002303_060 Hb_003605_160--Hb_002303_060 Hb_002000_140 Hb_002000_140 Hb_003605_160--Hb_002000_140 Hb_008071_020 Hb_008071_020 Hb_003605_160--Hb_008071_020 Hb_001329_150 Hb_001329_150 Hb_003605_160--Hb_001329_150 Hb_006452_110--Hb_000733_080 Hb_000130_100 Hb_000130_100 Hb_006452_110--Hb_000130_100 Hb_005000_330 Hb_005000_330 Hb_006452_110--Hb_005000_330 Hb_012340_050 Hb_012340_050 Hb_006452_110--Hb_012340_050 Hb_001163_040 Hb_001163_040 Hb_006452_110--Hb_001163_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88805 0.290583 2.26919 8.38807 1.92877 2.79651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95537 6.87982 6.01805 3.07011 1.94397

CAGE analysis