Hb_000322_140

Information

Type -
Description -
Location Contig322: 154931-156015
Sequence    

Annotation

kegg
ID rcu:RCOM_1047200
description hypothetical protein
nr
ID XP_002514128.1
description hypothetical protein RCOM_1047200 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RK84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1047200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34051: 154954-156023
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000322_140 0.0 - - hypothetical protein RCOM_1047200 [Ricinus communis]
2 Hb_000300_220 0.0795115119 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
3 Hb_002878_010 0.0868512447 - - -
4 Hb_001953_090 0.0920948498 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
5 Hb_004659_060 0.096197221 - - RAS-related GTP-binding family protein [Populus trichocarpa]
6 Hb_001461_010 0.0981489085 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
7 Hb_004374_140 0.1042373822 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
8 Hb_001284_030 0.10533248 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
9 Hb_004336_050 0.1059328379 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
10 Hb_006452_040 0.1061383631 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
11 Hb_002631_020 0.1078696096 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
12 Hb_011457_090 0.1103853743 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
13 Hb_068056_030 0.1105277619 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
14 Hb_004449_200 0.1118631767 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
15 Hb_001008_090 0.1123181608 - - cytochrome C oxidase, putative [Ricinus communis]
16 Hb_003018_050 0.1127581201 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
17 Hb_000042_200 0.1138025586 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
18 Hb_000272_140 0.11394725 - - Protein bem46, putative [Ricinus communis]
19 Hb_008544_010 0.1143823709 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
20 Hb_000122_020 0.1144600198 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000322_140 Hb_000322_140 Hb_000300_220 Hb_000300_220 Hb_000322_140--Hb_000300_220 Hb_002878_010 Hb_002878_010 Hb_000322_140--Hb_002878_010 Hb_001953_090 Hb_001953_090 Hb_000322_140--Hb_001953_090 Hb_004659_060 Hb_004659_060 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_001008_090 Hb_001008_090 Hb_000300_220--Hb_001008_090 Hb_011537_110 Hb_011537_110 Hb_000300_220--Hb_011537_110 Hb_068056_030 Hb_068056_030 Hb_000300_220--Hb_068056_030 Hb_011457_090 Hb_011457_090 Hb_000300_220--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_000300_220--Hb_183961_010 Hb_002878_010--Hb_001953_090 Hb_004336_050 Hb_004336_050 Hb_002878_010--Hb_004336_050 Hb_002878_010--Hb_004374_140 Hb_002878_010--Hb_001461_010 Hb_172706_030 Hb_172706_030 Hb_002878_010--Hb_172706_030 Hb_000042_200 Hb_000042_200 Hb_001953_090--Hb_000042_200 Hb_002918_290 Hb_002918_290 Hb_001953_090--Hb_002918_290 Hb_001842_040 Hb_001842_040 Hb_001953_090--Hb_001842_040 Hb_001284_030 Hb_001284_030 Hb_001953_090--Hb_001284_030 Hb_004659_060--Hb_001008_090 Hb_000417_260 Hb_000417_260 Hb_004659_060--Hb_000417_260 Hb_000122_020 Hb_000122_020 Hb_004659_060--Hb_000122_020 Hb_114310_080 Hb_114310_080 Hb_004659_060--Hb_114310_080 Hb_004449_200 Hb_004449_200 Hb_004659_060--Hb_004449_200 Hb_012490_050 Hb_012490_050 Hb_004659_060--Hb_012490_050 Hb_001461_010--Hb_004374_140 Hb_008544_010 Hb_008544_010 Hb_001461_010--Hb_008544_010 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_002631_020 Hb_002631_020 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_004374_140--Hb_008544_010 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.69539 0.821696 3.53905 16.1354 4.0486 9.85175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.1567 22.1867 17.5944 4.52906 6.20521

CAGE analysis