Hb_000836_130

Information

Type -
Description -
Location Contig836: 124522-125880
Sequence    

Annotation

kegg
ID rcu:RCOM_1616170
description hypothetical protein
nr
ID XP_012083342.1
description PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0J8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14369 PE=4 SV=1
Gene Ontology
ID GO:0009791
description polypeptide n-acetylgalactosaminyltransferase 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59923: 124735-125816 , PASA_asmbl_59924: 124735-125816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_130 0.0 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
2 Hb_000784_030 0.1017230963 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
3 Hb_000084_320 0.1084919626 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
4 Hb_001135_210 0.1173006236 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
5 Hb_001357_120 0.1178616737 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
6 Hb_003581_220 0.1182482292 - - unnamed protein product [Vitis vinifera]
7 Hb_000099_130 0.1196275182 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
8 Hb_010931_050 0.120889912 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
9 Hb_000963_140 0.1261721289 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000530_070 0.1271233951 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
11 Hb_003581_260 0.127447264 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
12 Hb_000163_210 0.1302695953 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
13 Hb_001232_140 0.1318374471 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
14 Hb_003086_060 0.1318955297 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
15 Hb_000196_080 0.1319640679 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
16 Hb_000162_140 0.1373125019 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
17 Hb_000802_100 0.1376267953 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
18 Hb_000083_090 0.1397083313 - - immunophilin, putative [Ricinus communis]
19 Hb_001575_020 0.1400715506 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001846_070 0.1408647087 - - PREDICTED: fructokinase-1 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_130 Hb_000836_130 Hb_000784_030 Hb_000784_030 Hb_000836_130--Hb_000784_030 Hb_000084_320 Hb_000084_320 Hb_000836_130--Hb_000084_320 Hb_001135_210 Hb_001135_210 Hb_000836_130--Hb_001135_210 Hb_001357_120 Hb_001357_120 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000099_130 Hb_000099_130 Hb_000836_130--Hb_000099_130 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_000784_030--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_003581_260 Hb_003581_260 Hb_000784_030--Hb_003581_260 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_000084_320--Hb_010931_050 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_001135_210--Hb_001232_140 Hb_001135_210--Hb_000099_130 Hb_002182_030 Hb_002182_030 Hb_001135_210--Hb_002182_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_001519_030 Hb_001519_030 Hb_001357_120--Hb_001519_030 Hb_002260_030 Hb_002260_030 Hb_001357_120--Hb_002260_030 Hb_000424_210 Hb_000424_210 Hb_001357_120--Hb_000424_210 Hb_000196_080 Hb_000196_080 Hb_001357_120--Hb_000196_080 Hb_001218_040 Hb_001218_040 Hb_001357_120--Hb_001218_040 Hb_032969_030 Hb_032969_030 Hb_003581_220--Hb_032969_030 Hb_002603_150 Hb_002603_150 Hb_003581_220--Hb_002603_150 Hb_000530_070 Hb_000530_070 Hb_003581_220--Hb_000530_070 Hb_010402_050 Hb_010402_050 Hb_003581_220--Hb_010402_050 Hb_001846_070 Hb_001846_070 Hb_003581_220--Hb_001846_070 Hb_001076_020 Hb_001076_020 Hb_003581_220--Hb_001076_020 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_000099_130--Hb_001232_140 Hb_001159_080 Hb_001159_080 Hb_000099_130--Hb_001159_080 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.730871 0.361271 0.415721 0.526575 0.481145 0.477587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.71475 4.02798 4.61693 0.891942 1.2597

CAGE analysis