Hb_000084_320

Information

Type -
Description -
Location Contig84: 261384-263715
Sequence    

Annotation

kegg
ID fve:101300834
description probable small nuclear ribonucleoprotein G-like
nr
ID XP_011004092.1
description PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
swissprot
ID O82221
description Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana GN=At2g23930 PE=2 SV=1
trembl
ID B9SWG3
description Small nuclear ribonucleoprotein G, putative OS=Ricinus communis GN=RCOM_0293010 PE=4 SV=1
Gene Ontology
ID GO:0005732
description probable small nuclear ribonucleoprotein g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000084_320 0.0 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]
2 Hb_000836_130 0.1084919626 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
3 Hb_001348_120 0.136198726 - - Phloem protein 2-B10, putative [Theobroma cacao]
4 Hb_010931_050 0.1423433465 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
5 Hb_000784_030 0.1444967614 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
6 Hb_001153_020 0.1522661647 - - PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]
7 Hb_001096_030 0.1525067317 - - uridylate kinase plant, putative [Ricinus communis]
8 Hb_000163_210 0.1559533057 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
9 Hb_000530_070 0.1614769762 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
10 Hb_002026_120 0.162769707 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
11 Hb_001357_120 0.1655876483 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
12 Hb_168905_010 0.1676779231 - - PREDICTED: AP-1 complex subunit sigma-1 isoform X2 [Cicer arietinum]
13 Hb_062135_020 0.1677836254 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
14 Hb_000928_130 0.168520928 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_003086_060 0.1696000962 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
16 Hb_000723_190 0.1701285937 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_001159_200 0.1707209952 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
18 Hb_000083_090 0.1724294656 - - immunophilin, putative [Ricinus communis]
19 Hb_021443_080 0.1735288636 - - PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Jatropha curcas]
20 Hb_000479_080 0.174762292 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000084_320 Hb_000084_320 Hb_000836_130 Hb_000836_130 Hb_000084_320--Hb_000836_130 Hb_001348_120 Hb_001348_120 Hb_000084_320--Hb_001348_120 Hb_010931_050 Hb_010931_050 Hb_000084_320--Hb_010931_050 Hb_000784_030 Hb_000784_030 Hb_000084_320--Hb_000784_030 Hb_001153_020 Hb_001153_020 Hb_000084_320--Hb_001153_020 Hb_001096_030 Hb_001096_030 Hb_000084_320--Hb_001096_030 Hb_000836_130--Hb_000784_030 Hb_001135_210 Hb_001135_210 Hb_000836_130--Hb_001135_210 Hb_001357_120 Hb_001357_120 Hb_000836_130--Hb_001357_120 Hb_003581_220 Hb_003581_220 Hb_000836_130--Hb_003581_220 Hb_000099_130 Hb_000099_130 Hb_000836_130--Hb_000099_130 Hb_000163_210 Hb_000163_210 Hb_001348_120--Hb_000163_210 Hb_000083_090 Hb_000083_090 Hb_001348_120--Hb_000083_090 Hb_000260_200 Hb_000260_200 Hb_001348_120--Hb_000260_200 Hb_001348_120--Hb_000836_130 Hb_000178_120 Hb_000178_120 Hb_001348_120--Hb_000178_120 Hb_010931_050--Hb_000836_130 Hb_010931_050--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_010931_050--Hb_000141_030 Hb_010931_050--Hb_001357_120 Hb_000963_140 Hb_000963_140 Hb_010931_050--Hb_000963_140 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_000784_030--Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_000784_030--Hb_001232_140 Hb_003581_260 Hb_003581_260 Hb_000784_030--Hb_003581_260 Hb_021443_080 Hb_021443_080 Hb_001153_020--Hb_021443_080 Hb_000635_210 Hb_000635_210 Hb_001153_020--Hb_000635_210 Hb_168905_010 Hb_168905_010 Hb_001153_020--Hb_168905_010 Hb_000200_290 Hb_000200_290 Hb_001153_020--Hb_000200_290 Hb_000997_360 Hb_000997_360 Hb_001153_020--Hb_000997_360 Hb_000125_210 Hb_000125_210 Hb_001153_020--Hb_000125_210 Hb_005663_120 Hb_005663_120 Hb_001096_030--Hb_005663_120 Hb_001096_030--Hb_001232_140 Hb_005000_180 Hb_005000_180 Hb_001096_030--Hb_005000_180 Hb_001096_030--Hb_000163_210 Hb_023344_050 Hb_023344_050 Hb_001096_030--Hb_023344_050 Hb_005527_040 Hb_005527_040 Hb_001096_030--Hb_005527_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.356061 0.122692 0.63309 0.244571 0.351167 0.145485
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94284 3.56921 3.76197 1.0232 0.911887

CAGE analysis