Hb_000141_030

Information

Type -
Description -
Location Contig141: 32538-34711
Sequence    

Annotation

kegg
ID rcu:RCOM_1062060
description hypothetical protein
nr
ID XP_012069957.1
description PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SSH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1062060 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_030 0.0 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
2 Hb_000963_140 0.1163197814 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_010931_050 0.1312901477 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
4 Hb_011360_080 0.1365640703 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
5 Hb_004429_070 0.1373794615 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
6 Hb_004324_050 0.1388731904 - - PREDICTED: spermine synthase [Jatropha curcas]
7 Hb_000368_060 0.1423201665 - - thioredoxin H-type 6 [Hevea brasiliensis]
8 Hb_000103_110 0.1459508846 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
9 Hb_001159_080 0.1466117663 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
10 Hb_000161_150 0.1467314563 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_000784_030 0.1468100697 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
12 Hb_000562_040 0.1518509123 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
13 Hb_000477_080 0.1530034443 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
14 Hb_000432_050 0.1536222164 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
15 Hb_029510_040 0.1576097226 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
16 Hb_002756_020 0.1590489367 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
17 Hb_001277_090 0.1613341042 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
18 Hb_009314_010 0.1616880127 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_003599_070 0.1653941357 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_000327_220 0.166892947 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]

Gene co-expression network

sample Hb_000141_030 Hb_000141_030 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_000099_130 Hb_000099_130 Hb_000963_140--Hb_000099_130 Hb_001159_080 Hb_001159_080 Hb_000963_140--Hb_001159_080 Hb_000836_130 Hb_000836_130 Hb_000963_140--Hb_000836_130 Hb_001135_210 Hb_001135_210 Hb_000963_140--Hb_001135_210 Hb_003581_260 Hb_003581_260 Hb_000963_140--Hb_003581_260 Hb_010931_050--Hb_000836_130 Hb_000784_030 Hb_000784_030 Hb_010931_050--Hb_000784_030 Hb_001357_120 Hb_001357_120 Hb_010931_050--Hb_001357_120 Hb_000084_320 Hb_000084_320 Hb_010931_050--Hb_000084_320 Hb_010931_050--Hb_000963_140 Hb_000477_080 Hb_000477_080 Hb_011360_080--Hb_000477_080 Hb_011360_080--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_011360_080--Hb_002290_040 Hb_011360_080--Hb_000368_060 Hb_002756_020 Hb_002756_020 Hb_011360_080--Hb_002756_020 Hb_004429_070--Hb_002756_020 Hb_004429_070--Hb_002290_040 Hb_004429_070--Hb_004324_050 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_004324_050--Hb_002290_040 Hb_000103_110 Hb_000103_110 Hb_004324_050--Hb_000103_110 Hb_004324_050--Hb_000368_060 Hb_012423_050 Hb_012423_050 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_000562_040 Hb_000562_040 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000368_060--Hb_000784_030 Hb_000368_060--Hb_000103_110 Hb_000368_060--Hb_003581_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.878 6.64216 4.16034 7.02683 4.47486 8.36268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7463 37.8537 118.564 12.8693 9.97928

CAGE analysis