Hb_002290_040

Information

Type -
Description -
Location Contig2290: 38830-43564
Sequence    

Annotation

kegg
ID rcu:RCOM_1259240
description hypothetical protein
nr
ID XP_002530530.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SJF3
description mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2
trembl
ID B9SX11
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1259240 PE=4 SV=1
Gene Ontology
ID GO:0042803
description mrna-decapping enzyme-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23888: 36892-43384 , PASA_asmbl_23889: 37008-38946
cDNA
(Sanger)
(ID:Location)		 048_P10.ab1: 40269-43381

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002290_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002756_020 0.0909250581 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
3 Hb_004429_070 0.0955150887 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
4 Hb_001959_160 0.0958762666 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_003147_050 0.0977236217 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_003943_030 0.1027631272 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
7 Hb_001153_220 0.1100388009 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
8 Hb_003551_050 0.1127995852 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
9 Hb_001538_140 0.1163516735 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
10 Hb_007429_030 0.1173723615 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
11 Hb_004324_050 0.1216526643 - - PREDICTED: spermine synthase [Jatropha curcas]
12 Hb_024952_010 0.1223549631 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
13 Hb_002078_460 0.1238597557 - - -
14 Hb_002603_160 0.1260285677 - - Arginyl-tRNA--protein transferase, putative [Ricinus communis]
15 Hb_005614_050 0.1273112904 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
16 Hb_012573_030 0.1279904428 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003408_030 0.128112198 - - PREDICTED: protein YIF1B [Jatropha curcas]
18 Hb_011360_080 0.1300443493 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_001762_060 0.1314066952 - - pantothenate kinase, putative [Ricinus communis]
20 Hb_006816_450 0.1335341293 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002290_040 Hb_002290_040 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_002756_020--Hb_004429_070 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_006816_450 Hb_006816_450 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_004324_050 Hb_004324_050 Hb_004429_070--Hb_004324_050 Hb_004429_070--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_004429_070--Hb_000141_030 Hb_001959_160--Hb_003943_030 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_001153_220 Hb_000156_100 Hb_000156_100 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_001538_140 Hb_001538_140 Hb_003147_050--Hb_001538_140 Hb_002078_460 Hb_002078_460 Hb_003147_050--Hb_002078_460 Hb_000162_140 Hb_000162_140 Hb_003147_050--Hb_000162_140 Hb_005839_110 Hb_005839_110 Hb_003147_050--Hb_005839_110 Hb_003929_120 Hb_003929_120 Hb_003147_050--Hb_003929_120 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_003943_030--Hb_000156_100 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_024952_010 Hb_024952_010 Hb_001153_220--Hb_024952_010 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.8071 15.3692 9.0419 22.7444 47.5835 75.1154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.95 109.349 278.792 46.8099 15.3612

CAGE analysis