Hb_001153_220

Information

Type -
Description -
Location Contig1153: 178993-182359
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08690g
description POPTRDRAFT_1067052; hypothetical protein
nr
ID XP_012087010.1
description PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
swissprot
ID Q9LDX3
description UDP-galactose/UDP-glucose transporter 4 OS=Arabidopsis thaliana GN=UTR4 PE=2 SV=1
trembl
ID A0A067JNQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20673 PE=4 SV=1
Gene Ontology
ID GO:0055085
description udp-galactose udp-glucose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04632: 178887-182342
cDNA
(Sanger)
(ID:Location)		 015_M10.ab1: 181064-182307

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_220 0.0 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
2 Hb_025214_130 0.0877370496 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
3 Hb_064997_010 0.0984149674 - - hypothetical protein JCGZ_19852 [Jatropha curcas]
4 Hb_001959_160 0.1016640371 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_024952_010 0.1073502474 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
6 Hb_002290_040 0.1100388009 - - conserved hypothetical protein [Ricinus communis]
7 Hb_023292_010 0.1216986997 - - Cucumisin precursor, putative [Ricinus communis]
8 Hb_003943_030 0.1221829261 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
9 Hb_007429_030 0.1225503883 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
10 Hb_001396_230 0.1239385149 - - hypothetical protein MIMGU_mgv1a023992mg, partial [Erythranthe guttata]
11 Hb_000157_010 0.1272151713 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_000156_100 0.1336228159 - - PREDICTED: uncharacterized mitochondrial protein ymf11 [Jatropha curcas]
13 Hb_008085_040 0.1348062719 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
14 Hb_003018_190 0.1399396635 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
15 Hb_001633_170 0.1418965538 - - PREDICTED: aspartokinase 2, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_000997_400 0.1467952054 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
17 Hb_010710_040 0.1480034088 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_004128_180 0.1485334348 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_008311_010 0.1486555586 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
20 Hb_002794_030 0.1486564292 - - hypothetical protein JCGZ_20185 [Jatropha curcas]

Gene co-expression network

sample Hb_001153_220 Hb_001153_220 Hb_025214_130 Hb_025214_130 Hb_001153_220--Hb_025214_130 Hb_064997_010 Hb_064997_010 Hb_001153_220--Hb_064997_010 Hb_001959_160 Hb_001959_160 Hb_001153_220--Hb_001959_160 Hb_024952_010 Hb_024952_010 Hb_001153_220--Hb_024952_010 Hb_002290_040 Hb_002290_040 Hb_001153_220--Hb_002290_040 Hb_023292_010 Hb_023292_010 Hb_001153_220--Hb_023292_010 Hb_007429_030 Hb_007429_030 Hb_025214_130--Hb_007429_030 Hb_025214_130--Hb_064997_010 Hb_004414_050 Hb_004414_050 Hb_025214_130--Hb_004414_050 Hb_002794_030 Hb_002794_030 Hb_025214_130--Hb_002794_030 Hb_025214_130--Hb_001959_160 Hb_003018_190 Hb_003018_190 Hb_064997_010--Hb_003018_190 Hb_000836_070 Hb_000836_070 Hb_064997_010--Hb_000836_070 Hb_000997_400 Hb_000997_400 Hb_064997_010--Hb_000997_400 Hb_008311_010 Hb_008311_010 Hb_064997_010--Hb_008311_010 Hb_003943_030 Hb_003943_030 Hb_001959_160--Hb_003943_030 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_000156_100 Hb_000156_100 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_001396_230 Hb_001396_230 Hb_024952_010--Hb_001396_230 Hb_001606_070 Hb_001606_070 Hb_024952_010--Hb_001606_070 Hb_005779_100 Hb_005779_100 Hb_024952_010--Hb_005779_100 Hb_002352_010 Hb_002352_010 Hb_024952_010--Hb_002352_010 Hb_000861_040 Hb_000861_040 Hb_024952_010--Hb_000861_040 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_004429_070 Hb_004429_070 Hb_002290_040--Hb_004429_070 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_002290_040--Hb_003943_030 Hb_001073_050 Hb_001073_050 Hb_023292_010--Hb_001073_050 Hb_001357_080 Hb_001357_080 Hb_023292_010--Hb_001357_080 Hb_023292_010--Hb_003018_190 Hb_002603_160 Hb_002603_160 Hb_023292_010--Hb_002603_160 Hb_006935_050 Hb_006935_050 Hb_023292_010--Hb_006935_050 Hb_100804_010 Hb_100804_010 Hb_023292_010--Hb_100804_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4687 12.5188 5.78358 10.0187 17.7291 55.0573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5091 49.792 125.437 12.9224 3.31158

CAGE analysis