Hb_007429_030

Information

Type -
Description -
Location Contig7429: 37759-43905
Sequence    

Annotation

kegg
ID rcu:RCOM_1174220
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_012088269.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JMS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25775 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007429_030 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
2 Hb_003943_030 0.0894134704 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
3 Hb_003504_020 0.0916327413 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
4 Hb_025214_130 0.1010002739 - - PREDICTED: uncharacterized protein LOC105640854 [Jatropha curcas]
5 Hb_004414_050 0.1087106875 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_019654_090 0.115431714 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
7 Hb_001959_160 0.1155132062 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
8 Hb_012573_030 0.1167554379 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002290_040 0.1173723615 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004128_180 0.1174906267 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001153_220 0.1225503883 - - PREDICTED: UDP-galactose/UDP-glucose transporter 2 [Jatropha curcas]
12 Hb_000125_030 0.1232442894 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
13 Hb_000406_120 0.1239532724 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
14 Hb_002045_180 0.1281261771 - - PREDICTED: uncharacterized protein LOC105649915 [Jatropha curcas]
15 Hb_001232_130 0.1283042353 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
16 Hb_000141_020 0.1294767924 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
17 Hb_002794_030 0.1299100353 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
18 Hb_000562_040 0.130144469 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_001159_080 0.1308051627 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
20 Hb_003408_030 0.1309578503 - - PREDICTED: protein YIF1B [Jatropha curcas]

Gene co-expression network

sample Hb_007429_030 Hb_007429_030 Hb_003943_030 Hb_003943_030 Hb_007429_030--Hb_003943_030 Hb_003504_020 Hb_003504_020 Hb_007429_030--Hb_003504_020 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_019654_090 Hb_019654_090 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160 Hb_003943_030--Hb_001959_160 Hb_000749_250 Hb_000749_250 Hb_003943_030--Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_003943_030--Hb_001232_130 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_000141_020 Hb_000141_020 Hb_003504_020--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_001153_220 Hb_001153_220 Hb_025214_130--Hb_001153_220 Hb_064997_010 Hb_064997_010 Hb_025214_130--Hb_064997_010 Hb_025214_130--Hb_004414_050 Hb_002794_030 Hb_002794_030 Hb_025214_130--Hb_002794_030 Hb_025214_130--Hb_001959_160 Hb_004414_050--Hb_000125_030 Hb_004410_100 Hb_004410_100 Hb_004414_050--Hb_004410_100 Hb_000019_060 Hb_000019_060 Hb_004414_050--Hb_000019_060 Hb_004128_180 Hb_004128_180 Hb_004414_050--Hb_004128_180 Hb_001159_080 Hb_001159_080 Hb_004414_050--Hb_001159_080 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_001959_160--Hb_001153_220 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9263 8.11409 3.60132 4.77423 6.81383 12.0802
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4977 28.1659 53.4768 5.9395 2.79783

CAGE analysis