Hb_000749_250

Information

Type -
Description -
Location Contig749: 261977-270384
Sequence    

Annotation

kegg
ID pop:POPTR_0001s41360g
description hypothetical protein
nr
ID XP_012084921.1
description PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
swissprot
ID F4IEM5
description LanC-like protein GCR2 OS=Arabidopsis thaliana GN=GCR2 PE=1 SV=1
trembl
ID A0A067JSU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20961 PE=4 SV=1
Gene Ontology
ID GO:0005886
description lanc-like protein gcr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56803: 262268-270008 , PASA_asmbl_56804: 262268-270027
cDNA
(Sanger)
(ID:Location)		 021_M16.ab1: 262268-264099 , 031_C02.ab1: 262268-263991

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000749_250 0.0 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
2 Hb_001232_130 0.0850732885 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
3 Hb_003943_030 0.0872782285 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
4 Hb_001143_090 0.1090294108 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
5 Hb_163950_010 0.1199837392 - - -
6 Hb_001959_160 0.1224429476 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
7 Hb_001946_320 0.1247486516 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
8 Hb_001437_240 0.1273921904 - - -
9 Hb_143629_090 0.1282767545 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
10 Hb_002307_090 0.1320598737 - - magnesium transporter CorA-like family protein [Populus trichocarpa]
11 Hb_002897_060 0.132627456 - - PREDICTED: uncharacterized protein LOC105649233 [Jatropha curcas]
12 Hb_002392_040 0.1333776556 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002936_050 0.1333997298 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR18 isoform X2 [Jatropha curcas]
14 Hb_000350_090 0.1348022541 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
15 Hb_001268_400 0.1356735572 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
16 Hb_006594_020 0.1370438991 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
17 Hb_002290_040 0.137424711 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007429_030 0.1397677646 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
19 Hb_005614_050 0.1422776699 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
20 Hb_000562_040 0.1422778512 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000749_250 Hb_000749_250 Hb_001232_130 Hb_001232_130 Hb_000749_250--Hb_001232_130 Hb_003943_030 Hb_003943_030 Hb_000749_250--Hb_003943_030 Hb_001143_090 Hb_001143_090 Hb_000749_250--Hb_001143_090 Hb_163950_010 Hb_163950_010 Hb_000749_250--Hb_163950_010 Hb_001959_160 Hb_001959_160 Hb_000749_250--Hb_001959_160 Hb_001946_320 Hb_001946_320 Hb_000749_250--Hb_001946_320 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001232_130--Hb_001946_320 Hb_001232_130--Hb_003943_030 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_003943_030--Hb_001959_160 Hb_007429_030 Hb_007429_030 Hb_003943_030--Hb_007429_030 Hb_000156_100 Hb_000156_100 Hb_003943_030--Hb_000156_100 Hb_002290_040 Hb_002290_040 Hb_003943_030--Hb_002290_040 Hb_004453_140 Hb_004453_140 Hb_001143_090--Hb_004453_140 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_001143_090--Hb_003943_030 Hb_001437_240 Hb_001437_240 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_009812_020 Hb_009812_020 Hb_163950_010--Hb_009812_020 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_001153_220 Hb_001153_220 Hb_001959_160--Hb_001153_220 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_001946_320--Hb_002307_090 Hb_001946_320--Hb_010589_040 Hb_000861_040 Hb_000861_040 Hb_001946_320--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_001946_320--Hb_015934_020 Hb_007229_060 Hb_007229_060 Hb_001946_320--Hb_007229_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.0923 34.536 7.55546 9.63785 100.352 57.9947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
145.846 189.763 340.747 40.3806 7.22076

CAGE analysis