Hb_006816_450

Information

Type -
Description -
Location Contig6816: 282228-283406
Sequence    

Annotation

kegg
ID rcu:RCOM_1688330
description hypothetical protein
nr
ID XP_002509855.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1688330 PE=4 SV=1
Gene Ontology
ID GO:0016491
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_450 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002756_020 0.1037970142 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
3 Hb_004410_100 0.118421236 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
4 Hb_007161_010 0.1260773023 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
5 Hb_001959_160 0.1261180518 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
6 Hb_002290_040 0.1335341293 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009314_010 0.1340901295 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_000436_010 0.1341277291 - - PREDICTED: probable polyamine transporter At1g31830 isoform X1 [Eucalyptus grandis]
9 Hb_004429_070 0.1408637469 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_003943_030 0.1450500968 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
11 Hb_005614_050 0.1453171404 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
12 Hb_000723_160 0.1524245721 transcription factor TF Family: TCP PREDICTED: transcription factor TCP11 [Jatropha curcas]
13 Hb_152439_020 0.15270541 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
14 Hb_000432_050 0.1563927995 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
15 Hb_001538_140 0.1569258338 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_000179_050 0.157789254 - - 40S ribosomal protein S17A [Hevea brasiliensis]
17 Hb_000327_220 0.159099076 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_001100_010 0.1601151932 - - F-box/FBD/LRR-repeat protein [Medicago truncatula]
19 Hb_007429_030 0.1605486592 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
20 Hb_003551_050 0.1620948222 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]

Gene co-expression network

sample Hb_006816_450 Hb_006816_450 Hb_002756_020 Hb_002756_020 Hb_006816_450--Hb_002756_020 Hb_004410_100 Hb_004410_100 Hb_006816_450--Hb_004410_100 Hb_007161_010 Hb_007161_010 Hb_006816_450--Hb_007161_010 Hb_001959_160 Hb_001959_160 Hb_006816_450--Hb_001959_160 Hb_002290_040 Hb_002290_040 Hb_006816_450--Hb_002290_040 Hb_009314_010 Hb_009314_010 Hb_006816_450--Hb_009314_010 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_000236_140 Hb_000236_140 Hb_004410_100--Hb_000236_140 Hb_004128_180 Hb_004128_180 Hb_004410_100--Hb_004128_180 Hb_119600_040 Hb_119600_040 Hb_004410_100--Hb_119600_040 Hb_004414_050 Hb_004414_050 Hb_004410_100--Hb_004414_050 Hb_006647_020 Hb_006647_020 Hb_004410_100--Hb_006647_020 Hb_004410_100--Hb_003551_050 Hb_007161_010--Hb_005614_050 Hb_000363_200 Hb_000363_200 Hb_007161_010--Hb_000363_200 Hb_000179_050 Hb_000179_050 Hb_007161_010--Hb_000179_050 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_003943_030 Hb_003943_030 Hb_001959_160--Hb_003943_030 Hb_008085_040 Hb_008085_040 Hb_001959_160--Hb_008085_040 Hb_001959_160--Hb_002290_040 Hb_001153_220 Hb_001153_220 Hb_001959_160--Hb_001153_220 Hb_000156_100 Hb_000156_100 Hb_001959_160--Hb_000156_100 Hb_006846_110 Hb_006846_110 Hb_001959_160--Hb_006846_110 Hb_002290_040--Hb_004429_070 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_002290_040--Hb_003943_030 Hb_002290_040--Hb_001153_220 Hb_000161_150 Hb_000161_150 Hb_009314_010--Hb_000161_150 Hb_000432_050 Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_000771_130 Hb_000771_130 Hb_009314_010--Hb_000771_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00428 1.7477 0.207725 0.963427 2.1812 2.68038
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46983 5.21527 14.6 4.81978 0.269563

CAGE analysis