Hb_000161_150

Information

Type -
Description -
Location Contig161: 154858-169413
Sequence    

Annotation

kegg
ID rcu:RCOM_1374140
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_012066777.1
description PREDICTED: protein argonaute 2-like [Jatropha curcas]
swissprot
ID Q9SHF2
description Protein argonaute 3 OS=Arabidopsis thaliana GN=AGO3 PE=3 SV=1
trembl
ID A0A067L5B4
description Protein argonaute OS=Jatropha curcas GN=JCGZ_00220 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14431: 154650-156992 , PASA_asmbl_14432: 154650-167198 , PASA_asmbl_14433: 165783-166446 , PASA_asmbl_14434: 158721-159127 , PASA_asmbl_14437: 167494-168015 , PASA_asmbl_14438: 168044-169147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_150 0.0 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
2 Hb_009314_010 0.1096405938 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_000771_130 0.1158855373 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_002756_020 0.1376674556 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
5 Hb_000316_020 0.1398725217 - - protein binding protein, putative [Ricinus communis]
6 Hb_000141_030 0.1467314563 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
7 Hb_000432_050 0.1478305075 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
8 Hb_000562_040 0.1546768246 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
9 Hb_004429_070 0.1550438765 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
10 Hb_001538_140 0.1575701921 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
11 Hb_003913_080 0.1614034612 - - rpl27A [Hemiselmis andersenii]
12 Hb_000016_190 0.1618978781 - - ABC transporter B family member 28 [Glycine soja]
13 Hb_005489_100 0.1675896126 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005224_010 0.1678715343 - - glycine-rich protein [Bruguiera gymnorhiza]
15 Hb_000784_030 0.1705535657 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
16 Hb_005614_050 0.1707639765 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
17 Hb_000327_220 0.1718010597 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
18 Hb_010931_050 0.1748640159 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
19 Hb_001159_080 0.1754391937 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
20 Hb_004324_050 0.1807640781 - - PREDICTED: spermine synthase [Jatropha curcas]

Gene co-expression network

sample Hb_000161_150 Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000161_150--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000432_050 Hb_000432_050 Hb_000161_150--Hb_000432_050 Hb_009314_010--Hb_000432_050 Hb_006816_450 Hb_006816_450 Hb_009314_010--Hb_006816_450 Hb_009314_010--Hb_002756_020 Hb_005224_010 Hb_005224_010 Hb_009314_010--Hb_005224_010 Hb_009314_010--Hb_000771_130 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_000432_050 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_004429_070 Hb_004429_070 Hb_002756_020--Hb_004429_070 Hb_002290_040 Hb_002290_040 Hb_002756_020--Hb_002290_040 Hb_000327_220 Hb_000327_220 Hb_002756_020--Hb_000327_220 Hb_002756_020--Hb_006816_450 Hb_005614_050 Hb_005614_050 Hb_002756_020--Hb_005614_050 Hb_003551_050 Hb_003551_050 Hb_002756_020--Hb_003551_050 Hb_000316_020--Hb_009314_010 Hb_000316_020--Hb_000771_130 Hb_000316_020--Hb_000432_050 Hb_003754_080 Hb_003754_080 Hb_000316_020--Hb_003754_080 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_000432_050--Hb_001538_140 Hb_029510_040 Hb_029510_040 Hb_000432_050--Hb_029510_040 Hb_000432_050--Hb_005839_110 Hb_000432_050--Hb_002756_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61973 1.92093 0.660406 2.15574 1.98527 2.33966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9441 13.2441 28.4452 7.68432 0.639377

CAGE analysis