Hb_003754_080

Information

Type -
Description -
Location Contig3754: 104478-107442
Sequence    

Annotation

kegg
ID tcc:TCM_009243
description hypothetical protein
nr
ID XP_012072612.1
description PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061E4P4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_009243 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003754_080 0.0 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
2 Hb_000316_020 0.1933714782 - - protein binding protein, putative [Ricinus communis]
3 Hb_000161_150 0.2232215264 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
4 Hb_000771_130 0.2232446874 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
5 Hb_008516_040 0.2267018681 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003913_080 0.233089201 - - rpl27A [Hemiselmis andersenii]
7 Hb_004208_100 0.2355637799 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
8 Hb_004333_020 0.2419481346 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_009314_010 0.2433395313 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
10 Hb_004291_010 0.2441320906 - - (R)-limonene synthase, putative [Ricinus communis]
11 Hb_080653_010 0.2463959003 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000912_020 0.2468978284 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
13 Hb_013766_010 0.2471822336 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
14 Hb_011316_120 0.2515280074 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
15 Hb_007747_180 0.2545435245 transcription factor TF Family: TCP PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like [Jatropha curcas]
16 Hb_149539_010 0.2556554025 - - -
17 Hb_003086_130 0.2604146421 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_001114_050 0.2646101392 - - hypothetical protein RCOM_0744580 [Ricinus communis]
19 Hb_002151_050 0.2646326595 - - cytochrome P450, putative [Ricinus communis]
20 Hb_000084_040 0.271257742 - - hypothetical protein RCOM_1007940 [Ricinus communis]

Gene co-expression network

sample Hb_003754_080 Hb_003754_080 Hb_000316_020 Hb_000316_020 Hb_003754_080--Hb_000316_020 Hb_000161_150 Hb_000161_150 Hb_003754_080--Hb_000161_150 Hb_000771_130 Hb_000771_130 Hb_003754_080--Hb_000771_130 Hb_008516_040 Hb_008516_040 Hb_003754_080--Hb_008516_040 Hb_003913_080 Hb_003913_080 Hb_003754_080--Hb_003913_080 Hb_004208_100 Hb_004208_100 Hb_003754_080--Hb_004208_100 Hb_000316_020--Hb_000161_150 Hb_009314_010 Hb_009314_010 Hb_000316_020--Hb_009314_010 Hb_000316_020--Hb_000771_130 Hb_000432_050 Hb_000432_050 Hb_000316_020--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_000316_020--Hb_001538_140 Hb_000161_150--Hb_009314_010 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000161_150--Hb_000432_050 Hb_000016_190 Hb_000016_190 Hb_000771_130--Hb_000016_190 Hb_000771_130--Hb_000432_050 Hb_000771_130--Hb_009314_010 Hb_005839_110 Hb_005839_110 Hb_000771_130--Hb_005839_110 Hb_000562_040 Hb_000562_040 Hb_000771_130--Hb_000562_040 Hb_150818_020 Hb_150818_020 Hb_008516_040--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_008516_040--Hb_000912_020 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_002989_060 Hb_002989_060 Hb_008516_040--Hb_002989_060 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_003913_080--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_003913_080--Hb_002151_050 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_002073_120 Hb_002073_120 Hb_004208_100--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_004208_100--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_004208_100--Hb_010417_010 Hb_000995_070 Hb_000995_070 Hb_004208_100--Hb_000995_070 Hb_011316_120 Hb_011316_120 Hb_004208_100--Hb_011316_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0376806 0.00994899 0 0.0259211 0.0266983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.152288 0.263583 0.585741 0.296419 0

CAGE analysis