Hb_000912_020

Information

Type -
Description -
Location Contig912: 37651-37971
Sequence    

Annotation

kegg
ID tcc:TCM_019992
description SAUR-like auxin-responsive protein family
nr
ID XP_012085928.1
description PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
swissprot
ID P33083
description Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
trembl
ID A0A067K3D2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22289 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000912_020 0.0 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
2 Hb_150818_020 0.1641533516 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
3 Hb_008516_040 0.1761387322 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011316_120 0.1982322027 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
5 Hb_002989_060 0.208685848 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
6 Hb_065378_010 0.2099600618 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
7 Hb_003754_080 0.2468978284 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_009644_040 0.2491936613 - - PREDICTED: protein SKIP34 [Jatropha curcas]
9 Hb_000316_020 0.2524478364 - - protein binding protein, putative [Ricinus communis]
10 Hb_081504_010 0.2634231848 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
11 Hb_108528_010 0.2649834187 - - unnamed protein product [Coffea canephora]
12 Hb_001150_030 0.2671179795 - - NADP-dependent oxidoreductase P1 isoform 3 [Theobroma cacao]
13 Hb_003052_210 0.27091839 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002151_050 0.2730087136 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000115_050 0.273038362 - - -
16 Hb_029920_040 0.2738455533 - - PREDICTED: uncharacterized protein LOC105635837 [Jatropha curcas]
17 Hb_000084_040 0.2746255311 - - hypothetical protein RCOM_1007940 [Ricinus communis]
18 Hb_179520_010 0.275678584 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
19 Hb_001842_130 0.2765645841 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002943_030 0.2793069821 - - -

Gene co-expression network

sample Hb_000912_020 Hb_000912_020 Hb_150818_020 Hb_150818_020 Hb_000912_020--Hb_150818_020 Hb_008516_040 Hb_008516_040 Hb_000912_020--Hb_008516_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_002989_060 Hb_002989_060 Hb_000912_020--Hb_002989_060 Hb_065378_010 Hb_065378_010 Hb_000912_020--Hb_065378_010 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_150818_020--Hb_008516_040 Hb_150818_020--Hb_002989_060 Hb_003052_210 Hb_003052_210 Hb_150818_020--Hb_003052_210 Hb_150818_020--Hb_065378_010 Hb_009644_040 Hb_009644_040 Hb_150818_020--Hb_009644_040 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_008516_040--Hb_002989_060 Hb_000084_040 Hb_000084_040 Hb_011316_120--Hb_000084_040 Hb_004208_100 Hb_004208_100 Hb_011316_120--Hb_004208_100 Hb_011316_120--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_011316_120--Hb_155384_010 Hb_004157_110 Hb_004157_110 Hb_011316_120--Hb_004157_110 Hb_002989_060--Hb_009644_040 Hb_002989_060--Hb_003052_210 Hb_001355_130 Hb_001355_130 Hb_002989_060--Hb_001355_130 Hb_000167_160 Hb_000167_160 Hb_065378_010--Hb_000167_160 Hb_029920_040 Hb_029920_040 Hb_065378_010--Hb_029920_040 Hb_000316_020 Hb_000316_020 Hb_065378_010--Hb_000316_020 Hb_065378_010--Hb_008516_040 Hb_003754_080--Hb_000316_020 Hb_000161_150 Hb_000161_150 Hb_003754_080--Hb_000161_150 Hb_000771_130 Hb_000771_130 Hb_003754_080--Hb_000771_130 Hb_003754_080--Hb_008516_040 Hb_003913_080 Hb_003913_080 Hb_003754_080--Hb_003913_080 Hb_003754_080--Hb_004208_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 1.08615 1.54854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3532 13.9874 29.3842 34.5963 0

CAGE analysis