Hb_011316_120

Information

Type transcription factor
Description TF Family: bHLH
Location Contig11316: 60360-75166
Sequence    

Annotation

kegg
ID rcu:RCOM_1498370
description DNA binding protein, putative
nr
ID XP_012090357.1
description PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
swissprot
ID Q9STJ6
description Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126 PE=2 SV=1
trembl
ID A0A067JQS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26191 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh118-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03951: 62836-62986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011316_120 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
2 Hb_000084_040 0.1419653398 - - hypothetical protein RCOM_1007940 [Ricinus communis]
3 Hb_000912_020 0.1982322027 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
4 Hb_004208_100 0.2319027862 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
5 Hb_008516_040 0.2418534615 - - conserved hypothetical protein [Ricinus communis]
6 Hb_155384_010 0.2464529341 - - -
7 Hb_004157_110 0.2489761786 - - -
8 Hb_003754_080 0.2515280074 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
9 Hb_065378_010 0.2610679747 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_149539_010 0.2700994606 - - -
11 Hb_000316_020 0.2787901675 - - protein binding protein, putative [Ricinus communis]
12 Hb_150818_020 0.2845195419 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
13 Hb_080653_010 0.2848987096 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_002989_060 0.2873302706 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
15 Hb_078001_010 0.2920082802 - - Uncharacterized protein TCM_000398 [Theobroma cacao]
16 Hb_005285_010 0.3004666339 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
17 Hb_000167_160 0.3032211668 - - -
18 Hb_003835_050 0.3101739109 - - Anthocyanidin 3-O-glucosyltransferase [Medicago truncatula]
19 Hb_001114_050 0.3178616904 - - hypothetical protein RCOM_0744580 [Ricinus communis]
20 Hb_009644_040 0.3179154041 - - PREDICTED: protein SKIP34 [Jatropha curcas]

Gene co-expression network

sample Hb_011316_120 Hb_011316_120 Hb_000084_040 Hb_000084_040 Hb_011316_120--Hb_000084_040 Hb_000912_020 Hb_000912_020 Hb_011316_120--Hb_000912_020 Hb_004208_100 Hb_004208_100 Hb_011316_120--Hb_004208_100 Hb_008516_040 Hb_008516_040 Hb_011316_120--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_011316_120--Hb_155384_010 Hb_004157_110 Hb_004157_110 Hb_011316_120--Hb_004157_110 Hb_080653_010 Hb_080653_010 Hb_000084_040--Hb_080653_010 Hb_005285_010 Hb_005285_010 Hb_000084_040--Hb_005285_010 Hb_000084_040--Hb_004157_110 Hb_000084_040--Hb_008516_040 Hb_000084_040--Hb_155384_010 Hb_150818_020 Hb_150818_020 Hb_000912_020--Hb_150818_020 Hb_000912_020--Hb_008516_040 Hb_002989_060 Hb_002989_060 Hb_000912_020--Hb_002989_060 Hb_065378_010 Hb_065378_010 Hb_000912_020--Hb_065378_010 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_002073_120 Hb_002073_120 Hb_004208_100--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_004208_100--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_004208_100--Hb_010417_010 Hb_000995_070 Hb_000995_070 Hb_004208_100--Hb_000995_070 Hb_004208_100--Hb_003754_080 Hb_008516_040--Hb_150818_020 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_008516_040--Hb_002989_060 Hb_003835_050 Hb_003835_050 Hb_155384_010--Hb_003835_050 Hb_054362_010 Hb_054362_010 Hb_155384_010--Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_155384_010--Hb_127993_010 Hb_008779_010 Hb_008779_010 Hb_155384_010--Hb_008779_010 Hb_020580_010 Hb_020580_010 Hb_004157_110--Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_004157_110--Hb_013429_020 Hb_174876_010 Hb_174876_010 Hb_004157_110--Hb_174876_010 Hb_028486_070 Hb_028486_070 Hb_004157_110--Hb_028486_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0886325 0 0 0.0122093 0.0324107 0.0624948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.904233 0.649638 3.08948 3.05499 0

CAGE analysis