Hb_008516_040

Information

Type -
Description -
Location Contig8516: 69428-70527
Sequence    

Annotation

kegg
ID rcu:RCOM_0610220
description hypothetical protein
nr
ID XP_002522008.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0610220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008516_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_150818_020 0.1347041948 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
3 Hb_000912_020 0.1761387322 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
4 Hb_108528_010 0.1870262181 - - unnamed protein product [Coffea canephora]
5 Hb_179520_010 0.1973877884 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
6 Hb_004064_020 0.1996136658 - - hypothetical protein M569_06853, partial [Genlisea aurea]
7 Hb_002989_060 0.2112586364 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
8 Hb_003052_210 0.2240509135 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003754_080 0.2267018681 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
10 Hb_065378_010 0.2297047104 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
11 Hb_004291_010 0.2302952706 - - (R)-limonene synthase, putative [Ricinus communis]
12 Hb_009644_040 0.2304275675 - - PREDICTED: protein SKIP34 [Jatropha curcas]
13 Hb_105602_020 0.2365211367 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
14 Hb_011316_120 0.2418534615 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
15 Hb_001842_130 0.2452587265 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010174_070 0.2492467075 - - -
17 Hb_000084_040 0.2537305637 - - hypothetical protein RCOM_1007940 [Ricinus communis]
18 Hb_000720_190 0.2612018278 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_000115_050 0.2630016987 - - -
20 Hb_003913_080 0.264655219 - - rpl27A [Hemiselmis andersenii]

Gene co-expression network

sample Hb_008516_040 Hb_008516_040 Hb_150818_020 Hb_150818_020 Hb_008516_040--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_008516_040--Hb_000912_020 Hb_108528_010 Hb_108528_010 Hb_008516_040--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_008516_040--Hb_179520_010 Hb_004064_020 Hb_004064_020 Hb_008516_040--Hb_004064_020 Hb_002989_060 Hb_002989_060 Hb_008516_040--Hb_002989_060 Hb_150818_020--Hb_002989_060 Hb_150818_020--Hb_000912_020 Hb_003052_210 Hb_003052_210 Hb_150818_020--Hb_003052_210 Hb_065378_010 Hb_065378_010 Hb_150818_020--Hb_065378_010 Hb_009644_040 Hb_009644_040 Hb_150818_020--Hb_009644_040 Hb_011316_120 Hb_011316_120 Hb_000912_020--Hb_011316_120 Hb_000912_020--Hb_002989_060 Hb_000912_020--Hb_065378_010 Hb_003754_080 Hb_003754_080 Hb_000912_020--Hb_003754_080 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_108528_010--Hb_003052_210 Hb_179520_010--Hb_010174_070 Hb_179520_010--Hb_000720_190 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_001842_130 Hb_001842_130 Hb_179520_010--Hb_001842_130 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_004064_020--Hb_010174_070 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_002989_060--Hb_009644_040 Hb_002989_060--Hb_003052_210 Hb_001355_130 Hb_001355_130 Hb_002989_060--Hb_001355_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.449862 0.588959 0.786752 0.640937 0

CAGE analysis