Hb_001842_130

Information

Type -
Description -
Location Contig1842: 175239-176660
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_002532192.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9T1S3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2161170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001842_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_179520_010 0.1935143952 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
3 Hb_108528_010 0.1979895877 - - unnamed protein product [Coffea canephora]
4 Hb_064885_080 0.2026864444 - - -
5 Hb_010174_070 0.2135195946 - - -
6 Hb_009644_040 0.2190760421 - - PREDICTED: protein SKIP34 [Jatropha curcas]
7 Hb_004064_020 0.2250642841 - - hypothetical protein M569_06853, partial [Genlisea aurea]
8 Hb_001114_340 0.2367746211 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_148209_060 0.2439785679 - - PREDICTED: BURP domain-containing protein 3-like [Jatropha curcas]
10 Hb_008516_040 0.2452587265 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000316_020 0.2537931021 - - protein binding protein, putative [Ricinus communis]
12 Hb_000363_150 0.2563876813 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
13 Hb_000720_190 0.2630193664 - - unknown [Populus trichocarpa x Populus deltoides]
14 Hb_000749_240 0.2634788599 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000115_050 0.2667773141 - - -
16 Hb_001902_120 0.2724187258 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
17 Hb_000856_370 0.2739992896 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
18 Hb_000912_020 0.2765645841 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
19 Hb_007017_020 0.277076878 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
20 Hb_003913_140 0.2793633459 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]

Gene co-expression network

sample Hb_001842_130 Hb_001842_130 Hb_179520_010 Hb_179520_010 Hb_001842_130--Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_001842_130--Hb_108528_010 Hb_064885_080 Hb_064885_080 Hb_001842_130--Hb_064885_080 Hb_010174_070 Hb_010174_070 Hb_001842_130--Hb_010174_070 Hb_009644_040 Hb_009644_040 Hb_001842_130--Hb_009644_040 Hb_004064_020 Hb_004064_020 Hb_001842_130--Hb_004064_020 Hb_179520_010--Hb_108528_010 Hb_179520_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_179520_010--Hb_000720_190 Hb_001902_120 Hb_001902_120 Hb_179520_010--Hb_001902_120 Hb_179520_010--Hb_004064_020 Hb_108528_010--Hb_010174_070 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210 Hb_001114_340 Hb_001114_340 Hb_064885_080--Hb_001114_340 Hb_064885_080--Hb_010174_070 Hb_064885_080--Hb_179520_010 Hb_000230_320 Hb_000230_320 Hb_064885_080--Hb_000230_320 Hb_000995_070 Hb_000995_070 Hb_064885_080--Hb_000995_070 Hb_010174_070--Hb_001902_120 Hb_010174_070--Hb_001114_340 Hb_010174_070--Hb_004064_020 Hb_073866_010 Hb_073866_010 Hb_009644_040--Hb_073866_010 Hb_001114_050 Hb_001114_050 Hb_009644_040--Hb_001114_050 Hb_008516_040 Hb_008516_040 Hb_009644_040--Hb_008516_040 Hb_150818_020 Hb_150818_020 Hb_009644_040--Hb_150818_020 Hb_115940_010 Hb_115940_010 Hb_009644_040--Hb_115940_010 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_003913_080 Hb_003913_080 Hb_004064_020--Hb_003913_080 Hb_004064_020--Hb_008516_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0116831 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.365394 0.182927 0.587923 0.187901 0.0545441

CAGE analysis