Hb_009644_040

Information

Type -
Description -
Location Contig9644: 17718-18017
Sequence    

Annotation

kegg
ID rcu:RCOM_0270660
description hypothetical protein
nr
ID XP_012081673.1
description PREDICTED: protein SKIP34 [Jatropha curcas]
swissprot
ID Q8GWU7
description Protein SKIP34 OS=Arabidopsis thaliana GN=SKIP34 PE=1 SV=1
trembl
ID A0A067K0P3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18706 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009644_040 0.0 - - PREDICTED: protein SKIP34 [Jatropha curcas]
2 Hb_073866_010 0.1868528137 - - PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
3 Hb_001114_050 0.2172613733 - - hypothetical protein RCOM_0744580 [Ricinus communis]
4 Hb_001842_130 0.2190760421 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008516_040 0.2304275675 - - conserved hypothetical protein [Ricinus communis]
6 Hb_150818_020 0.2396507221 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
7 Hb_115940_010 0.2428066811 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
8 Hb_000912_020 0.2491936613 - - PREDICTED: uncharacterized protein LOC105645039 [Jatropha curcas]
9 Hb_080048_020 0.2548630776 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006342_020 0.2674568263 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002989_060 0.2717605909 - - hypothetical protein JCGZ_22461 [Jatropha curcas]
12 Hb_001163_090 0.2873614665 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
13 Hb_000906_130 0.2884318258 - - -
14 Hb_000316_020 0.2890960737 - - protein binding protein, putative [Ricinus communis]
15 Hb_000731_250 0.2898997065 - - -
16 Hb_003052_210 0.2913003805 - - conserved hypothetical protein [Ricinus communis]
17 Hb_108528_010 0.2926122994 - - unnamed protein product [Coffea canephora]
18 Hb_065378_010 0.3012395687 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
19 Hb_004064_020 0.3013573471 - - hypothetical protein M569_06853, partial [Genlisea aurea]
20 Hb_179520_010 0.3024106862 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]

Gene co-expression network

sample Hb_009644_040 Hb_009644_040 Hb_073866_010 Hb_073866_010 Hb_009644_040--Hb_073866_010 Hb_001114_050 Hb_001114_050 Hb_009644_040--Hb_001114_050 Hb_001842_130 Hb_001842_130 Hb_009644_040--Hb_001842_130 Hb_008516_040 Hb_008516_040 Hb_009644_040--Hb_008516_040 Hb_150818_020 Hb_150818_020 Hb_009644_040--Hb_150818_020 Hb_115940_010 Hb_115940_010 Hb_009644_040--Hb_115940_010 Hb_073866_010--Hb_115940_010 Hb_002918_040 Hb_002918_040 Hb_073866_010--Hb_002918_040 Hb_006342_020 Hb_006342_020 Hb_073866_010--Hb_006342_020 Hb_000252_110 Hb_000252_110 Hb_073866_010--Hb_000252_110 Hb_156182_010 Hb_156182_010 Hb_073866_010--Hb_156182_010 Hb_004208_130 Hb_004208_130 Hb_001114_050--Hb_004208_130 Hb_080048_020 Hb_080048_020 Hb_001114_050--Hb_080048_020 Hb_000316_020 Hb_000316_020 Hb_001114_050--Hb_000316_020 Hb_001911_060 Hb_001911_060 Hb_001114_050--Hb_001911_060 Hb_082182_010 Hb_082182_010 Hb_001114_050--Hb_082182_010 Hb_179520_010 Hb_179520_010 Hb_001842_130--Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_001842_130--Hb_108528_010 Hb_064885_080 Hb_064885_080 Hb_001842_130--Hb_064885_080 Hb_010174_070 Hb_010174_070 Hb_001842_130--Hb_010174_070 Hb_004064_020 Hb_004064_020 Hb_001842_130--Hb_004064_020 Hb_008516_040--Hb_150818_020 Hb_000912_020 Hb_000912_020 Hb_008516_040--Hb_000912_020 Hb_008516_040--Hb_108528_010 Hb_008516_040--Hb_179520_010 Hb_008516_040--Hb_004064_020 Hb_002989_060 Hb_002989_060 Hb_008516_040--Hb_002989_060 Hb_150818_020--Hb_002989_060 Hb_150818_020--Hb_000912_020 Hb_003052_210 Hb_003052_210 Hb_150818_020--Hb_003052_210 Hb_065378_010 Hb_065378_010 Hb_150818_020--Hb_065378_010 Hb_115940_010--Hb_006342_020 Hb_115940_010--Hb_156182_010 Hb_001163_090 Hb_001163_090 Hb_115940_010--Hb_001163_090 Hb_003124_060 Hb_003124_060 Hb_115940_010--Hb_003124_060 Hb_005054_270 Hb_005054_270 Hb_115940_010--Hb_005054_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12288 0.884489 1.25777 1.36844 0.455233

CAGE analysis