Hb_080048_020

Information

Type -
Description -
Location Contig80048: 7121-7966
Sequence    

Annotation

kegg
ID rcu:RCOM_0817020
description hypothetical protein
nr
ID XP_002518310.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FGE9
description Protein trichome birefringence-like 12 OS=Arabidopsis thaliana GN=TBL12 PE=2 SV=1
trembl
ID B9RX41
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0817020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080048_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001114_050 0.198285792 - - hypothetical protein RCOM_0744580 [Ricinus communis]
3 Hb_021888_060 0.2214635622 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
4 Hb_002609_060 0.2452848966 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
5 Hb_009644_040 0.2548630776 - - PREDICTED: protein SKIP34 [Jatropha curcas]
6 Hb_132998_010 0.256522573 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
7 Hb_001911_060 0.2566986477 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_000286_090 0.2704019605 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
9 Hb_000098_220 0.2705510866 - - PREDICTED: VQ motif-containing protein 4 [Jatropha curcas]
10 Hb_001163_090 0.2729059769 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
11 Hb_000907_170 0.2732907419 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_161072_020 0.2772003142 - - -
13 Hb_002289_090 0.2773052248 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
14 Hb_081504_010 0.2823189494 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_003086_130 0.2823729483 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
16 Hb_005224_030 0.2857058515 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
17 Hb_008516_040 0.286494596 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000316_020 0.2867192597 - - protein binding protein, putative [Ricinus communis]
19 Hb_002719_080 0.2874578764 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
20 Hb_000115_050 0.288927385 - - -

Gene co-expression network

sample Hb_080048_020 Hb_080048_020 Hb_001114_050 Hb_001114_050 Hb_080048_020--Hb_001114_050 Hb_021888_060 Hb_021888_060 Hb_080048_020--Hb_021888_060 Hb_002609_060 Hb_002609_060 Hb_080048_020--Hb_002609_060 Hb_009644_040 Hb_009644_040 Hb_080048_020--Hb_009644_040 Hb_132998_010 Hb_132998_010 Hb_080048_020--Hb_132998_010 Hb_001911_060 Hb_001911_060 Hb_080048_020--Hb_001911_060 Hb_004208_130 Hb_004208_130 Hb_001114_050--Hb_004208_130 Hb_000316_020 Hb_000316_020 Hb_001114_050--Hb_000316_020 Hb_001114_050--Hb_001911_060 Hb_001114_050--Hb_009644_040 Hb_082182_010 Hb_082182_010 Hb_001114_050--Hb_082182_010 Hb_002719_080 Hb_002719_080 Hb_021888_060--Hb_002719_080 Hb_006718_010 Hb_006718_010 Hb_021888_060--Hb_006718_010 Hb_000648_020 Hb_000648_020 Hb_021888_060--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_021888_060--Hb_000364_210 Hb_002025_300 Hb_002025_300 Hb_021888_060--Hb_002025_300 Hb_103118_020 Hb_103118_020 Hb_021888_060--Hb_103118_020 Hb_000907_170 Hb_000907_170 Hb_002609_060--Hb_000907_170 Hb_145084_010 Hb_145084_010 Hb_002609_060--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_002609_060--Hb_000742_110 Hb_010560_040 Hb_010560_040 Hb_002609_060--Hb_010560_040 Hb_000363_200 Hb_000363_200 Hb_002609_060--Hb_000363_200 Hb_002609_060--Hb_002719_080 Hb_073866_010 Hb_073866_010 Hb_009644_040--Hb_073866_010 Hb_001842_130 Hb_001842_130 Hb_009644_040--Hb_001842_130 Hb_008516_040 Hb_008516_040 Hb_009644_040--Hb_008516_040 Hb_150818_020 Hb_150818_020 Hb_009644_040--Hb_150818_020 Hb_115940_010 Hb_115940_010 Hb_009644_040--Hb_115940_010 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_132998_010--Hb_001163_090 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_002289_090 Hb_002289_090 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_001911_060--Hb_002289_090 Hb_002835_100 Hb_002835_100 Hb_001911_060--Hb_002835_100 Hb_001222_050 Hb_001222_050 Hb_001911_060--Hb_001222_050 Hb_002748_030 Hb_002748_030 Hb_001911_060--Hb_002748_030 Hb_000116_430 Hb_000116_430 Hb_001911_060--Hb_000116_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 1.2669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86735 2.9338 3.03203 2.73174 0.626891

CAGE analysis