Hb_000286_090

Information

Type transcription factor
Description TF Family: B3
Location Contig286: 70702-71112
Sequence    

Annotation

kegg
ID rcu:RCOM_0290450
description hypothetical protein
nr
ID KDP42400.1
description hypothetical protein JCGZ_00197 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LD26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00197 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_090 0.0 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
2 Hb_132998_010 0.1580525304 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
3 Hb_021888_060 0.227972143 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
4 Hb_092820_020 0.233997735 - - ATP binding protein, putative [Ricinus communis]
5 Hb_001163_090 0.2419809196 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
6 Hb_002289_090 0.2600198486 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
7 Hb_080048_020 0.2704019605 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002719_080 0.2860545993 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
9 Hb_001307_210 0.2868919088 - - Os02g0814700 [Oryza sativa Japonica Group]
10 Hb_002112_010 0.2893813402 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
11 Hb_000753_190 0.2932967207 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
12 Hb_103118_020 0.2947760541 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
13 Hb_001387_020 0.298108367 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
14 Hb_023711_010 0.2984649134 - - -
15 Hb_001114_050 0.2998748307 - - hypothetical protein RCOM_0744580 [Ricinus communis]
16 Hb_001950_120 0.3022855819 - - PREDICTED: probable cadmium/zinc-transporting ATPase HMA1, chloroplastic [Jatropha curcas]
17 Hb_000227_130 0.3031905467 - - PREDICTED: peroxiredoxin-2F, mitochondrial [Jatropha curcas]
18 Hb_000819_070 0.3038455938 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
19 Hb_003124_020 0.304634423 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
20 Hb_000563_190 0.3058610278 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]

Gene co-expression network

sample Hb_000286_090 Hb_000286_090 Hb_132998_010 Hb_132998_010 Hb_000286_090--Hb_132998_010 Hb_021888_060 Hb_021888_060 Hb_000286_090--Hb_021888_060 Hb_092820_020 Hb_092820_020 Hb_000286_090--Hb_092820_020 Hb_001163_090 Hb_001163_090 Hb_000286_090--Hb_001163_090 Hb_002289_090 Hb_002289_090 Hb_000286_090--Hb_002289_090 Hb_080048_020 Hb_080048_020 Hb_000286_090--Hb_080048_020 Hb_132998_010--Hb_001163_090 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_132998_010--Hb_002289_090 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_002719_080 Hb_002719_080 Hb_021888_060--Hb_002719_080 Hb_006718_010 Hb_006718_010 Hb_021888_060--Hb_006718_010 Hb_000648_020 Hb_000648_020 Hb_021888_060--Hb_000648_020 Hb_000364_210 Hb_000364_210 Hb_021888_060--Hb_000364_210 Hb_002025_300 Hb_002025_300 Hb_021888_060--Hb_002025_300 Hb_103118_020 Hb_103118_020 Hb_021888_060--Hb_103118_020 Hb_092820_020--Hb_001163_090 Hb_092820_020--Hb_132998_010 Hb_000753_190 Hb_000753_190 Hb_092820_020--Hb_000753_190 Hb_065866_010 Hb_065866_010 Hb_092820_020--Hb_065866_010 Hb_002896_080 Hb_002896_080 Hb_092820_020--Hb_002896_080 Hb_003124_060 Hb_003124_060 Hb_001163_090--Hb_003124_060 Hb_000281_230 Hb_000281_230 Hb_001163_090--Hb_000281_230 Hb_115940_010 Hb_115940_010 Hb_001163_090--Hb_115940_010 Hb_006342_020 Hb_006342_020 Hb_001163_090--Hb_006342_020 Hb_004635_060 Hb_004635_060 Hb_001163_090--Hb_004635_060 Hb_001911_060 Hb_001911_060 Hb_002289_090--Hb_001911_060 Hb_000931_010 Hb_000931_010 Hb_002289_090--Hb_000931_010 Hb_001080_220 Hb_001080_220 Hb_002289_090--Hb_001080_220 Hb_012979_020 Hb_012979_020 Hb_002289_090--Hb_012979_020 Hb_000907_170 Hb_000907_170 Hb_002289_090--Hb_000907_170 Hb_001114_050 Hb_001114_050 Hb_080048_020--Hb_001114_050 Hb_080048_020--Hb_021888_060 Hb_002609_060 Hb_002609_060 Hb_080048_020--Hb_002609_060 Hb_009644_040 Hb_009644_040 Hb_080048_020--Hb_009644_040 Hb_080048_020--Hb_132998_010 Hb_080048_020--Hb_001911_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0673639 0 1.3259 7.61489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7882 30.4754 4.79794 15.6547 8.69994

CAGE analysis