Hb_002289_090

Information

Type -
Description -
Location Contig2289: 71958-73410
Sequence    

Annotation

kegg
ID -
description -
nr
ID KKX07521.1
description cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0005737
description cytoplasmic trna 2-thiolation protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002289_090 0.0 - - cytoplasmic tRNA 2-thiolation protein 2-like [Scleropages formosus]
2 Hb_001911_060 0.1935540485 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_000931_010 0.2180912517 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001080_220 0.2366064274 - - TPA: hypothetical protein ZEAMMB73_966926 [Zea mays]
5 Hb_012979_020 0.236981235 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
6 Hb_132998_010 0.2376771585 - - hypothetical protein JCGZ_00197 [Jatropha curcas]
7 Hb_000907_170 0.2461959444 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_003226_160 0.2474392565 - - PREDICTED: poly [ADP-ribose] polymerase 2-like isoform X2 [Populus euphratica]
9 Hb_031718_010 0.2516029133 - - -
10 Hb_002609_060 0.2537235893 - - PREDICTED: sugar transport protein 8-like [Jatropha curcas]
11 Hb_150379_010 0.2543959464 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
12 Hb_002835_100 0.2557716257 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
13 Hb_000563_190 0.2596320645 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
14 Hb_002896_080 0.2596479434 - - -
15 Hb_000286_090 0.2600198486 transcription factor TF Family: B3 hypothetical protein JCGZ_00197 [Jatropha curcas]
16 Hb_060411_010 0.2614361799 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
17 Hb_048476_050 0.2620113723 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
18 Hb_021888_060 0.2638721879 - - PREDICTED: zinc finger CCCH domain-containing protein 15 homolog [Jatropha curcas]
19 Hb_001114_050 0.2645604954 - - hypothetical protein RCOM_0744580 [Ricinus communis]
20 Hb_010480_030 0.2663659698 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_002289_090 Hb_002289_090 Hb_001911_060 Hb_001911_060 Hb_002289_090--Hb_001911_060 Hb_000931_010 Hb_000931_010 Hb_002289_090--Hb_000931_010 Hb_001080_220 Hb_001080_220 Hb_002289_090--Hb_001080_220 Hb_012979_020 Hb_012979_020 Hb_002289_090--Hb_012979_020 Hb_132998_010 Hb_132998_010 Hb_002289_090--Hb_132998_010 Hb_000907_170 Hb_000907_170 Hb_002289_090--Hb_000907_170 Hb_002835_100 Hb_002835_100 Hb_001911_060--Hb_002835_100 Hb_001114_050 Hb_001114_050 Hb_001911_060--Hb_001114_050 Hb_001222_050 Hb_001222_050 Hb_001911_060--Hb_001222_050 Hb_002748_030 Hb_002748_030 Hb_001911_060--Hb_002748_030 Hb_000116_430 Hb_000116_430 Hb_001911_060--Hb_000116_430 Hb_150379_010 Hb_150379_010 Hb_000931_010--Hb_150379_010 Hb_000931_010--Hb_001080_220 Hb_000703_270 Hb_000703_270 Hb_000931_010--Hb_000703_270 Hb_001009_300 Hb_001009_300 Hb_000931_010--Hb_001009_300 Hb_004800_120 Hb_004800_120 Hb_000931_010--Hb_004800_120 Hb_003623_050 Hb_003623_050 Hb_000931_010--Hb_003623_050 Hb_001080_220--Hb_150379_010 Hb_000486_010 Hb_000486_010 Hb_001080_220--Hb_000486_010 Hb_004324_250 Hb_004324_250 Hb_001080_220--Hb_004324_250 Hb_001080_220--Hb_000703_270 Hb_003333_060 Hb_003333_060 Hb_001080_220--Hb_003333_060 Hb_165071_030 Hb_165071_030 Hb_012979_020--Hb_165071_030 Hb_003861_020 Hb_003861_020 Hb_012979_020--Hb_003861_020 Hb_001014_120 Hb_001014_120 Hb_012979_020--Hb_001014_120 Hb_101808_010 Hb_101808_010 Hb_012979_020--Hb_101808_010 Hb_005725_090 Hb_005725_090 Hb_012979_020--Hb_005725_090 Hb_000286_090 Hb_000286_090 Hb_132998_010--Hb_000286_090 Hb_001163_090 Hb_001163_090 Hb_132998_010--Hb_001163_090 Hb_021888_060 Hb_021888_060 Hb_132998_010--Hb_021888_060 Hb_000230_030 Hb_000230_030 Hb_132998_010--Hb_000230_030 Hb_001493_120 Hb_001493_120 Hb_132998_010--Hb_001493_120 Hb_002609_060 Hb_002609_060 Hb_000907_170--Hb_002609_060 Hb_145084_010 Hb_145084_010 Hb_000907_170--Hb_145084_010 Hb_000742_110 Hb_000742_110 Hb_000907_170--Hb_000742_110 Hb_002138_010 Hb_002138_010 Hb_000907_170--Hb_002138_010 Hb_010560_040 Hb_010560_040 Hb_000907_170--Hb_010560_040 Hb_003097_210 Hb_003097_210 Hb_000907_170--Hb_003097_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.317064 0.0380246 0.0341303 0 0.390712 1.23103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.832576 1.63576 0.998278 2.35077 0.78879

CAGE analysis