Hb_003861_020

Information

Type -
Description -
Location Contig3861: 13009-18857
Sequence    

Annotation

kegg
ID rcu:RCOM_1613520
description F-box and wd40 domain protein, putative (EC:2.7.11.7)
nr
ID XP_010278505.1
description PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
swissprot
ID Q9FNZ2
description Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana GN=ZFWD1 PE=2 SV=1
trembl
ID A0A067JXM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14472 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger ccch domain-containing protein 48

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003861_020 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
2 Hb_001703_120 0.1967914281 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
3 Hb_000362_120 0.2215211266 - - glutamate receptor 2 plant, putative [Ricinus communis]
4 Hb_012979_020 0.2311292494 - - PREDICTED: neutral alpha-glucosidase C [Solanum lycopersicum]
5 Hb_000136_040 0.2355653509 - - PREDICTED: protein RRP5 homolog [Jatropha curcas]
6 Hb_010480_030 0.2365247038 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
7 Hb_012180_020 0.2365436245 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
8 Hb_001616_120 0.2378333756 - - -
9 Hb_002419_030 0.2386454485 - - -
10 Hb_001523_020 0.2390000418 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
11 Hb_049675_010 0.2391497903 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
12 Hb_036311_020 0.2430044442 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_001117_170 0.2435734284 - - -
14 Hb_090855_010 0.2460881322 - - Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_009270_010 0.2479665684 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
16 Hb_006370_040 0.2491916409 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
17 Hb_002496_040 0.2517619494 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03380, mitochondrial [Jatropha curcas]
18 Hb_004553_020 0.2527580727 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
19 Hb_027402_140 0.254602559 - - PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Jatropha curcas]
20 Hb_002686_380 0.2567620754 - - -

Gene co-expression network

sample Hb_003861_020 Hb_003861_020 Hb_001703_120 Hb_001703_120 Hb_003861_020--Hb_001703_120 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_012979_020 Hb_012979_020 Hb_003861_020--Hb_012979_020 Hb_000136_040 Hb_000136_040 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030 Hb_012180_020 Hb_012180_020 Hb_003861_020--Hb_012180_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440 Hb_002496_040 Hb_002496_040 Hb_000362_120--Hb_002496_040 Hb_002205_190 Hb_002205_190 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000340_390 Hb_000340_390 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_165071_030 Hb_165071_030 Hb_012979_020--Hb_165071_030 Hb_001014_120 Hb_001014_120 Hb_012979_020--Hb_001014_120 Hb_002289_090 Hb_002289_090 Hb_012979_020--Hb_002289_090 Hb_101808_010 Hb_101808_010 Hb_012979_020--Hb_101808_010 Hb_005725_090 Hb_005725_090 Hb_012979_020--Hb_005725_090 Hb_000136_060 Hb_000136_060 Hb_000136_040--Hb_000136_060 Hb_003623_030 Hb_003623_030 Hb_000136_040--Hb_003623_030 Hb_000470_080 Hb_000470_080 Hb_000136_040--Hb_000470_080 Hb_000743_050 Hb_000743_050 Hb_000136_040--Hb_000743_050 Hb_005205_020 Hb_005205_020 Hb_000136_040--Hb_005205_020 Hb_002028_170 Hb_002028_170 Hb_000136_040--Hb_002028_170 Hb_001789_080 Hb_001789_080 Hb_010480_030--Hb_001789_080 Hb_006114_010 Hb_006114_010 Hb_010480_030--Hb_006114_010 Hb_001500_040 Hb_001500_040 Hb_010480_030--Hb_001500_040 Hb_003893_010 Hb_003893_010 Hb_010480_030--Hb_003893_010 Hb_010480_030--Hb_000340_390 Hb_000635_220 Hb_000635_220 Hb_010480_030--Hb_000635_220 Hb_001946_270 Hb_001946_270 Hb_012180_020--Hb_001946_270 Hb_002419_030 Hb_002419_030 Hb_012180_020--Hb_002419_030 Hb_006642_040 Hb_006642_040 Hb_012180_020--Hb_006642_040 Hb_001258_060 Hb_001258_060 Hb_012180_020--Hb_001258_060 Hb_002407_080 Hb_002407_080 Hb_012180_020--Hb_002407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72853 0.961099 0 0.0212994 1.14959 3.6177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.973679 0.855202 4.69589 4.18929 1.88249

CAGE analysis