Hb_012180_020

Information

Type -
Description -
Location Contig12180: 19101-19948
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15100g
description hypothetical protein
nr
ID XP_006368943.1
description hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MUV6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s15100g PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06620: 19071-21874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012180_020 0.0 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
2 Hb_001946_270 0.1721448913 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
3 Hb_002419_030 0.2274228009 - - -
4 Hb_006642_040 0.2305045409 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
5 Hb_001258_060 0.2305689607 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
6 Hb_002407_080 0.2355051591 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
7 Hb_003861_020 0.2365436245 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
8 Hb_000230_520 0.2381243101 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
9 Hb_002025_310 0.2389684367 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
10 Hb_000051_110 0.2394844661 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007763_030 0.2410127592 - - PREDICTED: uncharacterized protein LOC105638154 [Jatropha curcas]
12 Hb_001500_040 0.2437155722 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_011928_020 0.2470942877 - - something about silencing protein sas10, putative [Ricinus communis]
14 Hb_000206_250 0.2475342532 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
15 Hb_090804_010 0.247601934 - - ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_143629_040 0.247760634 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171789_010 0.2491263131 - - phosphoenolpyruvate carboxylase [Glycine max]
18 Hb_000497_110 0.2503113079 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
19 Hb_010480_030 0.2541695892 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
20 Hb_007943_130 0.2545490021 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_012180_020 Hb_012180_020 Hb_001946_270 Hb_001946_270 Hb_012180_020--Hb_001946_270 Hb_002419_030 Hb_002419_030 Hb_012180_020--Hb_002419_030 Hb_006642_040 Hb_006642_040 Hb_012180_020--Hb_006642_040 Hb_001258_060 Hb_001258_060 Hb_012180_020--Hb_001258_060 Hb_002407_080 Hb_002407_080 Hb_012180_020--Hb_002407_080 Hb_003861_020 Hb_003861_020 Hb_012180_020--Hb_003861_020 Hb_000206_250 Hb_000206_250 Hb_001946_270--Hb_000206_250 Hb_000230_520 Hb_000230_520 Hb_001946_270--Hb_000230_520 Hb_001894_150 Hb_001894_150 Hb_001946_270--Hb_001894_150 Hb_002028_150 Hb_002028_150 Hb_001946_270--Hb_002028_150 Hb_002900_190 Hb_002900_190 Hb_001946_270--Hb_002900_190 Hb_001010_070 Hb_001010_070 Hb_002419_030--Hb_001010_070 Hb_009270_010 Hb_009270_010 Hb_002419_030--Hb_009270_010 Hb_000136_040 Hb_000136_040 Hb_002419_030--Hb_000136_040 Hb_004448_090 Hb_004448_090 Hb_002419_030--Hb_004448_090 Hb_000470_080 Hb_000470_080 Hb_002419_030--Hb_000470_080 Hb_003206_020 Hb_003206_020 Hb_002419_030--Hb_003206_020 Hb_000497_110 Hb_000497_110 Hb_006642_040--Hb_000497_110 Hb_007943_130 Hb_007943_130 Hb_006642_040--Hb_007943_130 Hb_015175_020 Hb_015175_020 Hb_006642_040--Hb_015175_020 Hb_011671_180 Hb_011671_180 Hb_006642_040--Hb_011671_180 Hb_001009_170 Hb_001009_170 Hb_006642_040--Hb_001009_170 Hb_023001_060 Hb_023001_060 Hb_006642_040--Hb_023001_060 Hb_014894_010 Hb_014894_010 Hb_001258_060--Hb_014894_010 Hb_004242_190 Hb_004242_190 Hb_001258_060--Hb_004242_190 Hb_008864_090 Hb_008864_090 Hb_001258_060--Hb_008864_090 Hb_001246_030 Hb_001246_030 Hb_001258_060--Hb_001246_030 Hb_000805_320 Hb_000805_320 Hb_001258_060--Hb_000805_320 Hb_007763_030 Hb_007763_030 Hb_001258_060--Hb_007763_030 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_002407_080--Hb_001258_060 Hb_000009_620 Hb_000009_620 Hb_002407_080--Hb_000009_620 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040 Hb_001703_120 Hb_001703_120 Hb_003861_020--Hb_001703_120 Hb_000362_120 Hb_000362_120 Hb_003861_020--Hb_000362_120 Hb_012979_020 Hb_012979_020 Hb_003861_020--Hb_012979_020 Hb_003861_020--Hb_000136_040 Hb_010480_030 Hb_010480_030 Hb_003861_020--Hb_010480_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.890123 0.38863 0.426253 0 0.893645 1.76302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.72344 0.193457 1.79152 2.89099 0.653675

CAGE analysis