Hb_000497_110

Information

Type -
Description -
Location Contig497: 106059-108386
Sequence    

Annotation

kegg
ID rcu:RCOM_1438890
description hypothetical protein
nr
ID XP_012088675.1
description PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23065 PE=4 SV=1
Gene Ontology
ID GO:0005886
description snare associated golgi protein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_110 0.0 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
2 Hb_011671_180 0.06430601 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
3 Hb_001157_110 0.0836226292 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
4 Hb_002000_080 0.0874012159 - - PREDICTED: polypyrimidine tract-binding protein homolog 3 isoform X2 [Jatropha curcas]
5 Hb_006642_040 0.0920351416 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
6 Hb_001009_170 0.0954208599 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
7 Hb_004837_130 0.1004857014 - - PREDICTED: armadillo repeat-containing protein 8 [Jatropha curcas]
8 Hb_004920_120 0.1019204971 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000031_120 0.1029413066 - - PREDICTED: uncharacterized protein LOC105637488 [Jatropha curcas]
10 Hb_000999_050 0.1043986245 - - PREDICTED: eukaryotic translation initiation factor isoform 4G-1 isoform X1 [Jatropha curcas]
11 Hb_000580_190 0.1082090011 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
12 Hb_000252_200 0.1086732866 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002400_410 0.1100352887 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
14 Hb_002842_020 0.1110261942 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
15 Hb_002481_080 0.1139815456 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
16 Hb_019654_030 0.1148506571 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
17 Hb_001619_070 0.116644968 - - PREDICTED: uncharacterized protein LOC103503585 [Cucumis melo]
18 Hb_001246_030 0.1169642521 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
19 Hb_004607_050 0.1174610755 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_015175_020 0.1176781616 - - hypothetical protein JCGZ_14452 [Jatropha curcas]

Gene co-expression network

sample Hb_000497_110 Hb_000497_110 Hb_011671_180 Hb_011671_180 Hb_000497_110--Hb_011671_180 Hb_001157_110 Hb_001157_110 Hb_000497_110--Hb_001157_110 Hb_002000_080 Hb_002000_080 Hb_000497_110--Hb_002000_080 Hb_006642_040 Hb_006642_040 Hb_000497_110--Hb_006642_040 Hb_001009_170 Hb_001009_170 Hb_000497_110--Hb_001009_170 Hb_004837_130 Hb_004837_130 Hb_000497_110--Hb_004837_130 Hb_011671_180--Hb_002000_080 Hb_011671_180--Hb_001009_170 Hb_004920_120 Hb_004920_120 Hb_011671_180--Hb_004920_120 Hb_000252_200 Hb_000252_200 Hb_011671_180--Hb_000252_200 Hb_000031_120 Hb_000031_120 Hb_011671_180--Hb_000031_120 Hb_000096_160 Hb_000096_160 Hb_001157_110--Hb_000096_160 Hb_019654_030 Hb_019654_030 Hb_001157_110--Hb_019654_030 Hb_002631_080 Hb_002631_080 Hb_001157_110--Hb_002631_080 Hb_000228_110 Hb_000228_110 Hb_001157_110--Hb_000228_110 Hb_001085_240 Hb_001085_240 Hb_001157_110--Hb_001085_240 Hb_165928_030 Hb_165928_030 Hb_002000_080--Hb_165928_030 Hb_002481_080 Hb_002481_080 Hb_002000_080--Hb_002481_080 Hb_073973_100 Hb_073973_100 Hb_002000_080--Hb_073973_100 Hb_006907_130 Hb_006907_130 Hb_002000_080--Hb_006907_130 Hb_003294_070 Hb_003294_070 Hb_002000_080--Hb_003294_070 Hb_007943_130 Hb_007943_130 Hb_006642_040--Hb_007943_130 Hb_015175_020 Hb_015175_020 Hb_006642_040--Hb_015175_020 Hb_006642_040--Hb_011671_180 Hb_006642_040--Hb_001009_170 Hb_023001_060 Hb_023001_060 Hb_006642_040--Hb_023001_060 Hb_005490_030 Hb_005490_030 Hb_001009_170--Hb_005490_030 Hb_001009_170--Hb_004920_120 Hb_001959_210 Hb_001959_210 Hb_001009_170--Hb_001959_210 Hb_001619_070 Hb_001619_070 Hb_001009_170--Hb_001619_070 Hb_007044_140 Hb_007044_140 Hb_001009_170--Hb_007044_140 Hb_000999_050 Hb_000999_050 Hb_004837_130--Hb_000999_050 Hb_004837_130--Hb_000252_200 Hb_004607_050 Hb_004607_050 Hb_004837_130--Hb_004607_050 Hb_002675_070 Hb_002675_070 Hb_004837_130--Hb_002675_070 Hb_000174_180 Hb_000174_180 Hb_004837_130--Hb_000174_180 Hb_011485_070 Hb_011485_070 Hb_004837_130--Hb_011485_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7753 10.7204 6.69248 17.9111 14.8785 28.9429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4566 19.5337 30.1646 45.2841 18.5284

CAGE analysis