Hb_002631_080

Information

Type -
Description -
Location Contig2631: 65896-72103
Sequence    

Annotation

kegg
ID rcu:RCOM_1574030
description glyceraldehyde 3-phosphate dehydrogenase, putative (EC:1.2.1.12)
nr
ID XP_002513328.1
description glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID Q5E924
description Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic OS=Arabidopsis thaliana GN=GAPCP2 PE=2 SV=1
trembl
ID B9RHV9
description Glyceraldehyde-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_1574030 PE=3 SV=1
Gene Ontology
ID GO:0016620
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27460: 66005-72026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_080 0.0 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_001157_110 0.0941267956 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
3 Hb_001085_240 0.1068336275 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_003633_050 0.1071544229 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
5 Hb_000096_160 0.1086929061 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
6 Hb_000094_210 0.1115933101 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
7 Hb_002675_140 0.1116512969 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
8 Hb_019654_030 0.1122915059 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
9 Hb_000621_020 0.1123372433 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
10 Hb_000181_050 0.1127271203 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
11 Hb_050147_010 0.1161278023 - - hypothetical protein B456_005G052100 [Gossypium raimondii]
12 Hb_000228_110 0.1208476536 - - unnamed protein product [Vitis vinifera]
13 Hb_009193_030 0.1265998499 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
14 Hb_002631_010 0.136716193 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
15 Hb_000103_270 0.1370293122 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
16 Hb_002889_030 0.1380582115 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
17 Hb_001104_100 0.1392176475 - - RecName: Full=Enolase 2; AltName: Full=2-phospho-D-glycerate hydro-lyase 2; AltName: Full=2-phosphoglycerate dehydratase 2; AltName: Allergen=Hev b 9 [Hevea brasiliensis]
18 Hb_000381_110 0.1409433305 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
19 Hb_000497_110 0.1421225609 - - PREDICTED: uncharacterized protein LOC105647268 [Jatropha curcas]
20 Hb_001332_040 0.1423490289 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_002631_080 Hb_002631_080 Hb_001157_110 Hb_001157_110 Hb_002631_080--Hb_001157_110 Hb_001085_240 Hb_001085_240 Hb_002631_080--Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_002631_080--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_002631_080--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_002631_080--Hb_000094_210 Hb_002675_140 Hb_002675_140 Hb_002631_080--Hb_002675_140 Hb_000497_110 Hb_000497_110 Hb_001157_110--Hb_000497_110 Hb_001157_110--Hb_000096_160 Hb_019654_030 Hb_019654_030 Hb_001157_110--Hb_019654_030 Hb_000228_110 Hb_000228_110 Hb_001157_110--Hb_000228_110 Hb_001157_110--Hb_001085_240 Hb_001085_240--Hb_003633_050 Hb_001085_240--Hb_000096_160 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_000228_110 Hb_001085_240--Hb_002675_140 Hb_005914_170 Hb_005914_170 Hb_001085_240--Hb_005914_170 Hb_003633_050--Hb_000096_160 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_003633_050--Hb_019654_030 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_000069_210 Hb_000069_210 Hb_000094_210--Hb_000069_210 Hb_002631_010 Hb_002631_010 Hb_000094_210--Hb_002631_010 Hb_007416_090 Hb_007416_090 Hb_000094_210--Hb_007416_090 Hb_000094_210--Hb_003633_050 Hb_000025_190 Hb_000025_190 Hb_000094_210--Hb_000025_190 Hb_000034_070 Hb_000034_070 Hb_002675_140--Hb_000034_070 Hb_001369_250 Hb_001369_250 Hb_002675_140--Hb_001369_250 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.43298 5.02096 4.26065 20.2153 6.71554 10.8454
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.4235 11.2612 17.8279 28.3426 5.9277

CAGE analysis