Hb_001894_150

Information

Type -
Description -
Location Contig1894: 138601-141252
Sequence    

Annotation

kegg
ID rcu:RCOM_0528050
description nucleoredoxin, putative
nr
ID XP_002525368.1
description nucleoredoxin, putative [Ricinus communis]
swissprot
ID Q0JIL1
description Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1
trembl
ID B9SH99
description Nucleoredoxin, putative OS=Ricinus communis GN=RCOM_0528050 PE=4 SV=1
Gene Ontology
ID GO:0005623
description probable nucleoredoxin 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18815: 138520-141246
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_150 0.0 - - nucleoredoxin, putative [Ricinus communis]
2 Hb_007943_130 0.0722397134 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
3 Hb_030116_020 0.0851476246 - - hypothetical protein POPTR_0016s13630g [Populus trichocarpa]
4 Hb_000123_210 0.0851941719 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
5 Hb_007101_170 0.091093453 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
6 Hb_000206_250 0.0911062414 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
7 Hb_001172_010 0.1017845687 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
8 Hb_000700_140 0.1071793219 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
9 Hb_000244_220 0.1077711256 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
10 Hb_000252_170 0.1078566594 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
11 Hb_143629_110 0.1115151406 - - glutamyl-tRNA synthetase, cytoplasmic, putative [Ricinus communis]
12 Hb_000627_230 0.1117067001 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
13 Hb_002400_310 0.1124919813 - - hypothetical protein JCGZ_07138 [Jatropha curcas]
14 Hb_106371_010 0.1129557186 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_003747_010 0.1131085901 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
16 Hb_011218_040 0.1134880376 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
17 Hb_006831_040 0.1141214611 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
18 Hb_004994_220 0.1149890996 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
19 Hb_001143_160 0.1163786313 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 26 isoform X2 [Jatropha curcas]
20 Hb_010931_120 0.1172156969 - - myosin heavy chain-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001894_150 Hb_001894_150 Hb_007943_130 Hb_007943_130 Hb_001894_150--Hb_007943_130 Hb_030116_020 Hb_030116_020 Hb_001894_150--Hb_030116_020 Hb_000123_210 Hb_000123_210 Hb_001894_150--Hb_000123_210 Hb_007101_170 Hb_007101_170 Hb_001894_150--Hb_007101_170 Hb_000206_250 Hb_000206_250 Hb_001894_150--Hb_000206_250 Hb_001172_010 Hb_001172_010 Hb_001894_150--Hb_001172_010 Hb_007943_130--Hb_000123_210 Hb_007943_130--Hb_030116_020 Hb_007943_130--Hb_000206_250 Hb_006642_040 Hb_006642_040 Hb_007943_130--Hb_006642_040 Hb_106371_010 Hb_106371_010 Hb_007943_130--Hb_106371_010 Hb_003747_010 Hb_003747_010 Hb_030116_020--Hb_003747_010 Hb_030116_020--Hb_001172_010 Hb_000700_140 Hb_000700_140 Hb_030116_020--Hb_000700_140 Hb_030116_020--Hb_000123_210 Hb_033834_060 Hb_033834_060 Hb_030116_020--Hb_033834_060 Hb_030116_020--Hb_106371_010 Hb_001143_160 Hb_001143_160 Hb_000123_210--Hb_001143_160 Hb_000011_200 Hb_000011_200 Hb_000123_210--Hb_000011_200 Hb_000225_040 Hb_000225_040 Hb_000123_210--Hb_000225_040 Hb_000193_190 Hb_000193_190 Hb_000123_210--Hb_000193_190 Hb_006827_020 Hb_006827_020 Hb_000123_210--Hb_006827_020 Hb_123352_020 Hb_123352_020 Hb_000123_210--Hb_123352_020 Hb_002400_310 Hb_002400_310 Hb_007101_170--Hb_002400_310 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_007101_170--Hb_000206_250 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_000206_250--Hb_000123_210 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_009627_010 Hb_009627_010 Hb_001172_010--Hb_009627_010 Hb_002304_090 Hb_002304_090 Hb_001172_010--Hb_002304_090 Hb_004429_100 Hb_004429_100 Hb_001172_010--Hb_004429_100 Hb_001172_010--Hb_033834_060 Hb_007520_030 Hb_007520_030 Hb_001172_010--Hb_007520_030 Hb_000160_040 Hb_000160_040 Hb_001172_010--Hb_000160_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.734 87.425 43.7458 65.5894 162.849 104.252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.573 58.7498 113.089 182.334 38.5977

CAGE analysis