Hb_001946_270

Information

Type -
Description -
Location Contig1946: 239566-242831
Sequence    

Annotation

kegg
ID rcu:RCOM_0222500
description Mitochondrial deoxynucleotide carrier, putative
nr
ID KDP32386.1
description hypothetical protein JCGZ_13311 [Jatropha curcas]
swissprot
ID Q9SUV1
description Adenine nucleotide transporter BT1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1
trembl
ID A0A067K819
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13311 PE=3 SV=1
Gene Ontology
ID GO:0006811
description adenine nucleotide transporter chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001946_270 0.0 - - hypothetical protein JCGZ_13311 [Jatropha curcas]
2 Hb_012180_020 0.1721448913 - - hypothetical protein POPTR_0001s15100g [Populus trichocarpa]
3 Hb_000206_250 0.182429737 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
4 Hb_000230_520 0.1877039063 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
5 Hb_001894_150 0.1917121524 - - nucleoredoxin, putative [Ricinus communis]
6 Hb_002028_150 0.1922561767 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
7 Hb_002900_190 0.1929429215 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
8 Hb_000976_430 0.1941207372 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJD5 [Jatropha curcas]
9 Hb_008864_090 0.1960366454 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
10 Hb_002025_310 0.1970457736 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_001500_040 0.1972508839 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_007943_130 0.1991357 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
13 Hb_000252_170 0.1997363038 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
14 Hb_001645_140 0.2010332012 - - PREDICTED: AT-hook motif nuclear-localized protein 13-like [Jatropha curcas]
15 Hb_010480_030 0.2020653156 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Jatropha curcas]
16 Hb_002374_100 0.2061836341 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
17 Hb_001789_080 0.2062441582 - - PREDICTED: uncharacterized protein At3g49055 [Jatropha curcas]
18 Hb_000051_110 0.206279399 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001269_550 0.2072195431 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
20 Hb_001258_060 0.207909756 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]

Gene co-expression network

sample Hb_001946_270 Hb_001946_270 Hb_012180_020 Hb_012180_020 Hb_001946_270--Hb_012180_020 Hb_000206_250 Hb_000206_250 Hb_001946_270--Hb_000206_250 Hb_000230_520 Hb_000230_520 Hb_001946_270--Hb_000230_520 Hb_001894_150 Hb_001894_150 Hb_001946_270--Hb_001894_150 Hb_002028_150 Hb_002028_150 Hb_001946_270--Hb_002028_150 Hb_002900_190 Hb_002900_190 Hb_001946_270--Hb_002900_190 Hb_002419_030 Hb_002419_030 Hb_012180_020--Hb_002419_030 Hb_006642_040 Hb_006642_040 Hb_012180_020--Hb_006642_040 Hb_001258_060 Hb_001258_060 Hb_012180_020--Hb_001258_060 Hb_002407_080 Hb_002407_080 Hb_012180_020--Hb_002407_080 Hb_003861_020 Hb_003861_020 Hb_012180_020--Hb_003861_020 Hb_000123_210 Hb_000123_210 Hb_000206_250--Hb_000123_210 Hb_007101_170 Hb_007101_170 Hb_000206_250--Hb_007101_170 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_001143_160 Hb_001143_160 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_000230_520--Hb_000206_250 Hb_033152_080 Hb_033152_080 Hb_000230_520--Hb_033152_080 Hb_000230_520--Hb_007101_170 Hb_000483_360 Hb_000483_360 Hb_000230_520--Hb_000483_360 Hb_000413_180 Hb_000413_180 Hb_000230_520--Hb_000413_180 Hb_002007_240 Hb_002007_240 Hb_000230_520--Hb_002007_240 Hb_007943_130 Hb_007943_130 Hb_001894_150--Hb_007943_130 Hb_030116_020 Hb_030116_020 Hb_001894_150--Hb_030116_020 Hb_001894_150--Hb_000123_210 Hb_001894_150--Hb_007101_170 Hb_001894_150--Hb_000206_250 Hb_001172_010 Hb_001172_010 Hb_001894_150--Hb_001172_010 Hb_034482_020 Hb_034482_020 Hb_002028_150--Hb_034482_020 Hb_000976_430 Hb_000976_430 Hb_002028_150--Hb_000976_430 Hb_000207_050 Hb_000207_050 Hb_002028_150--Hb_000207_050 Hb_130279_010 Hb_130279_010 Hb_002028_150--Hb_130279_010 Hb_002374_100 Hb_002374_100 Hb_002028_150--Hb_002374_100 Hb_001205_120 Hb_001205_120 Hb_002028_150--Hb_001205_120 Hb_001771_140 Hb_001771_140 Hb_002900_190--Hb_001771_140 Hb_001386_120 Hb_001386_120 Hb_002900_190--Hb_001386_120 Hb_015746_010 Hb_015746_010 Hb_002900_190--Hb_015746_010 Hb_001604_010 Hb_001604_010 Hb_002900_190--Hb_001604_010 Hb_010931_120 Hb_010931_120 Hb_002900_190--Hb_010931_120 Hb_012022_030 Hb_012022_030 Hb_002900_190--Hb_012022_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203785 0.101996 0.153238 0.0114417 0.181688 0.177579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195632 0.076953 0.288735 0.40977 0.0535774

CAGE analysis