Hb_000230_520

Information

Type -
Description -
Location Contig230: 487861-498594
Sequence    

Annotation

kegg
ID rcu:RCOM_0678100
description Membrane protein PB1A10.07c, putative
nr
ID XP_012069514.1
description PREDICTED: serine incorporator 3 [Jatropha curcas]
swissprot
ID Q5R533
description Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1
trembl
ID B9RSR7
description Membrane protein PB1A10.07c, putative OS=Ricinus communis GN=RCOM_0678100 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable serine incorporator

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24079: 487931-498523
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_520 0.0 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
2 Hb_000206_250 0.0905442844 - - PREDICTED: UBP1-associated protein 2A-like [Jatropha curcas]
3 Hb_033152_080 0.1078752982 - - RNA-binding protein Nova-1, putative [Ricinus communis]
4 Hb_007101_170 0.1116038758 - - hypothetical protein POPTR_0010s10490g [Populus trichocarpa]
5 Hb_000483_360 0.1120596109 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
6 Hb_000413_180 0.1123077427 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_002007_240 0.1174539736 - - PREDICTED: F-box protein At1g55000 [Jatropha curcas]
8 Hb_001936_020 0.1178311958 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
9 Hb_003728_030 0.1196990453 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
10 Hb_000270_760 0.122124732 - - PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Jatropha curcas]
11 Hb_010931_120 0.1225787606 - - myosin heavy chain-related family protein [Populus trichocarpa]
12 Hb_000230_080 0.1231474537 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
13 Hb_003994_240 0.1234022588 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
14 Hb_001894_150 0.1240855341 - - nucleoredoxin, putative [Ricinus communis]
15 Hb_000244_220 0.1240881153 - - PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like [Jatropha curcas]
16 Hb_000000_370 0.1244172245 transcription factor TF Family: BES1 PREDICTED: protein BRASSINAZOLE-RESISTANT 1 [Jatropha curcas]
17 Hb_001500_040 0.1245277319 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_010175_020 0.1269015346 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_001663_030 0.1271781707 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
20 Hb_003750_080 0.1272219046 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000230_520 Hb_000230_520 Hb_000206_250 Hb_000206_250 Hb_000230_520--Hb_000206_250 Hb_033152_080 Hb_033152_080 Hb_000230_520--Hb_033152_080 Hb_007101_170 Hb_007101_170 Hb_000230_520--Hb_007101_170 Hb_000483_360 Hb_000483_360 Hb_000230_520--Hb_000483_360 Hb_000413_180 Hb_000413_180 Hb_000230_520--Hb_000413_180 Hb_002007_240 Hb_002007_240 Hb_000230_520--Hb_002007_240 Hb_000123_210 Hb_000123_210 Hb_000206_250--Hb_000123_210 Hb_000206_250--Hb_007101_170 Hb_090804_010 Hb_090804_010 Hb_000206_250--Hb_090804_010 Hb_004994_220 Hb_004994_220 Hb_000206_250--Hb_004994_220 Hb_001143_160 Hb_001143_160 Hb_000206_250--Hb_001143_160 Hb_002131_020 Hb_002131_020 Hb_000206_250--Hb_002131_020 Hb_004734_060 Hb_004734_060 Hb_033152_080--Hb_004734_060 Hb_000803_190 Hb_000803_190 Hb_033152_080--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_033152_080--Hb_000953_010 Hb_000808_180 Hb_000808_180 Hb_033152_080--Hb_000808_180 Hb_000184_130 Hb_000184_130 Hb_033152_080--Hb_000184_130 Hb_000209_020 Hb_000209_020 Hb_033152_080--Hb_000209_020 Hb_002400_310 Hb_002400_310 Hb_007101_170--Hb_002400_310 Hb_000676_110 Hb_000676_110 Hb_007101_170--Hb_000676_110 Hb_001790_020 Hb_001790_020 Hb_007101_170--Hb_001790_020 Hb_000030_040 Hb_000030_040 Hb_007101_170--Hb_000030_040 Hb_010175_020 Hb_010175_020 Hb_007101_170--Hb_010175_020 Hb_003728_030 Hb_003728_030 Hb_000483_360--Hb_003728_030 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000556_020 Hb_000556_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000300_280 Hb_000300_280 Hb_000483_360--Hb_000300_280 Hb_010710_010 Hb_010710_010 Hb_000413_180--Hb_010710_010 Hb_000230_080 Hb_000230_080 Hb_000413_180--Hb_000230_080 Hb_000413_180--Hb_010175_020 Hb_003750_080 Hb_003750_080 Hb_000413_180--Hb_003750_080 Hb_000152_820 Hb_000152_820 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_009701_010 Hb_009701_010 Hb_002007_240--Hb_009701_010 Hb_002400_400 Hb_002400_400 Hb_002007_240--Hb_002400_400 Hb_005214_090 Hb_005214_090 Hb_002007_240--Hb_005214_090 Hb_000270_760 Hb_000270_760 Hb_002007_240--Hb_000270_760 Hb_000200_280 Hb_000200_280 Hb_002007_240--Hb_000200_280 Hb_002110_030 Hb_002110_030 Hb_002007_240--Hb_002110_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.11 53.2917 12.7954 10.5558 62.959 60.2779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.1276 24.1183 59.5133 64.7649 17.7686

CAGE analysis