Hb_000009_620

Information

Type -
Description -
Location Contig9: 612372-614166
Sequence    

Annotation

kegg
ID rcu:RCOM_0603290
description zinc finger protein, putative
nr
ID XP_002522360.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID O80470
description GDSL esterase/lipase At2g23540 OS=Arabidopsis thaliana GN=At2g23540 PE=2 SV=1
trembl
ID B9S8P1
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0603290 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at2g23540

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_620 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001856_010 0.1823764157 - - DNA binding protein, putative [Ricinus communis]
3 Hb_028872_060 0.1826624693 - - PREDICTED: ankyrin-3-like [Jatropha curcas]
4 Hb_000828_040 0.1828013012 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_002407_080 0.1886202808 - - hypothetical protein JCGZ_00752 [Jatropha curcas]
6 Hb_004342_030 0.1889101239 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_114310_040 0.2024563435 - - PREDICTED: purple acid phosphatase 2-like [Jatropha curcas]
8 Hb_000920_270 0.2045481588 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_24521 [Jatropha curcas]
9 Hb_011218_080 0.205358156 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
10 Hb_001902_070 0.2053842715 - - ATP binding protein, putative [Ricinus communis]
11 Hb_004242_190 0.2079721045 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
12 Hb_000984_050 0.2104553355 - - sucrose transporter 5 [Hevea brasiliensis]
13 Hb_155123_010 0.2165582445 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
14 Hb_001952_070 0.2168218966 - - 40S ribosomal protein S6B [Hevea brasiliensis]
15 Hb_123051_020 0.2170580239 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
16 Hb_001278_070 0.2184156771 - - hypothetical protein glysoja_020139 [Glycine soja]
17 Hb_004883_060 0.2196792154 - - PREDICTED: uncharacterized protein LOC105647345 isoform X1 [Jatropha curcas]
18 Hb_003160_020 0.2250524931 - - PREDICTED: uncharacterized protein LOC105639457 [Jatropha curcas]
19 Hb_000116_480 0.2269455111 - - PREDICTED: MORC family CW-type zinc finger protein 3-like [Jatropha curcas]
20 Hb_000608_060 0.2292240697 - - -

Gene co-expression network

sample Hb_000009_620 Hb_000009_620 Hb_001856_010 Hb_001856_010 Hb_000009_620--Hb_001856_010 Hb_028872_060 Hb_028872_060 Hb_000009_620--Hb_028872_060 Hb_000828_040 Hb_000828_040 Hb_000009_620--Hb_000828_040 Hb_002407_080 Hb_002407_080 Hb_000009_620--Hb_002407_080 Hb_004342_030 Hb_004342_030 Hb_000009_620--Hb_004342_030 Hb_114310_040 Hb_114310_040 Hb_000009_620--Hb_114310_040 Hb_002391_230 Hb_002391_230 Hb_001856_010--Hb_002391_230 Hb_155123_010 Hb_155123_010 Hb_001856_010--Hb_155123_010 Hb_000134_350 Hb_000134_350 Hb_001856_010--Hb_000134_350 Hb_004738_020 Hb_004738_020 Hb_001856_010--Hb_004738_020 Hb_001514_190 Hb_001514_190 Hb_001856_010--Hb_001514_190 Hb_001150_040 Hb_001150_040 Hb_028872_060--Hb_001150_040 Hb_004242_190 Hb_004242_190 Hb_028872_060--Hb_004242_190 Hb_004230_040 Hb_004230_040 Hb_028872_060--Hb_004230_040 Hb_000640_300 Hb_000640_300 Hb_028872_060--Hb_000640_300 Hb_028872_060--Hb_155123_010 Hb_001507_100 Hb_001507_100 Hb_000828_040--Hb_001507_100 Hb_000828_040--Hb_000640_300 Hb_003160_020 Hb_003160_020 Hb_000828_040--Hb_003160_020 Hb_000828_040--Hb_028872_060 Hb_000828_040--Hb_001150_040 Hb_002407_080--Hb_004242_190 Hb_003073_180 Hb_003073_180 Hb_002407_080--Hb_003073_180 Hb_002972_020 Hb_002972_020 Hb_002407_080--Hb_002972_020 Hb_001258_060 Hb_001258_060 Hb_002407_080--Hb_001258_060 Hb_005273_040 Hb_005273_040 Hb_002407_080--Hb_005273_040 Hb_034299_040 Hb_034299_040 Hb_004342_030--Hb_034299_040 Hb_001902_070 Hb_001902_070 Hb_004342_030--Hb_001902_070 Hb_000041_220 Hb_000041_220 Hb_004342_030--Hb_000041_220 Hb_000398_190 Hb_000398_190 Hb_004342_030--Hb_000398_190 Hb_000270_220 Hb_000270_220 Hb_004342_030--Hb_000270_220 Hb_011218_080 Hb_011218_080 Hb_114310_040--Hb_011218_080 Hb_000920_270 Hb_000920_270 Hb_114310_040--Hb_000920_270 Hb_002078_420 Hb_002078_420 Hb_114310_040--Hb_002078_420 Hb_011861_070 Hb_011861_070 Hb_114310_040--Hb_011861_070 Hb_004096_080 Hb_004096_080 Hb_114310_040--Hb_004096_080 Hb_005052_010 Hb_005052_010 Hb_114310_040--Hb_005052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.21482 1.42653 0.1647 0.110622 3.57031 4.49414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04613 1.11641 2.2396 6.44001 0

CAGE analysis