Hb_002391_230

Information

Type -
Description -
Location Contig2391: 149401-151147
Sequence    

Annotation

kegg
ID rcu:RCOM_0745080
description hypothetical protein
nr
ID XP_002525077.1
description hypothetical protein RCOM_0745080 [Ricinus communis]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID B9SGF8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0745080 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_230 0.0 - - hypothetical protein RCOM_0745080 [Ricinus communis]
2 Hb_011218_060 0.1382822963 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
3 Hb_001856_020 0.1386965045 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
4 Hb_000193_250 0.1442879375 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
5 Hb_000056_100 0.1649112448 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
6 Hb_000134_350 0.1654095645 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
7 Hb_007943_080 0.1662582485 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
8 Hb_003747_240 0.1716884528 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
9 Hb_002849_210 0.1741224388 - - protein binding protein, putative [Ricinus communis]
10 Hb_001856_010 0.175338882 - - DNA binding protein, putative [Ricinus communis]
11 Hb_152439_020 0.1761105203 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
12 Hb_000622_310 0.1807482713 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
13 Hb_000120_050 0.1815676956 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
14 Hb_000179_050 0.1826473446 - - 40S ribosomal protein S17A [Hevea brasiliensis]
15 Hb_000157_010 0.1845207043 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_008376_010 0.1854590798 - - -
17 Hb_011909_040 0.1876063947 - - hypothetical protein JCGZ_00750 [Jatropha curcas]
18 Hb_000805_090 0.1880696765 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
19 Hb_003861_080 0.1882427816 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
20 Hb_098993_010 0.1893209775 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002391_230 Hb_002391_230 Hb_011218_060 Hb_011218_060 Hb_002391_230--Hb_011218_060 Hb_001856_020 Hb_001856_020 Hb_002391_230--Hb_001856_020 Hb_000193_250 Hb_000193_250 Hb_002391_230--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_002391_230--Hb_000056_100 Hb_000134_350 Hb_000134_350 Hb_002391_230--Hb_000134_350 Hb_007943_080 Hb_007943_080 Hb_002391_230--Hb_007943_080 Hb_000291_280 Hb_000291_280 Hb_011218_060--Hb_000291_280 Hb_182424_010 Hb_182424_010 Hb_011218_060--Hb_182424_010 Hb_005227_070 Hb_005227_070 Hb_011218_060--Hb_005227_070 Hb_000622_310 Hb_000622_310 Hb_011218_060--Hb_000622_310 Hb_011909_040 Hb_011909_040 Hb_011218_060--Hb_011909_040 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_001856_020--Hb_000193_250 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_000157_010 Hb_000157_010 Hb_001856_020--Hb_000157_010 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230 Hb_152439_020 Hb_152439_020 Hb_000193_250--Hb_152439_020 Hb_004306_060 Hb_004306_060 Hb_000193_250--Hb_004306_060 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000500_040 Hb_000500_040 Hb_000056_100--Hb_000500_040 Hb_000056_100--Hb_000124_020 Hb_002890_280 Hb_002890_280 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_003861_080 Hb_003861_080 Hb_000056_100--Hb_003861_080 Hb_000138_040 Hb_000138_040 Hb_000134_350--Hb_000138_040 Hb_000134_350--Hb_007943_080 Hb_000358_080 Hb_000358_080 Hb_000134_350--Hb_000358_080 Hb_000134_350--Hb_003861_080 Hb_009382_020 Hb_009382_020 Hb_000134_350--Hb_009382_020 Hb_000661_170 Hb_000661_170 Hb_000134_350--Hb_000661_170 Hb_007943_080--Hb_000358_080 Hb_000120_050 Hb_000120_050 Hb_007943_080--Hb_000120_050 Hb_007558_140 Hb_007558_140 Hb_007943_080--Hb_007558_140 Hb_007943_080--Hb_003861_080 Hb_098993_010 Hb_098993_010 Hb_007943_080--Hb_098993_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93274 0.940249 0.0335081 0.243327 2.87323 2.31699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.18711 1.81593 5.35139 1.83405 0

CAGE analysis