Hb_001856_020

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1856: 24343-28603
Sequence    

Annotation

kegg
ID rcu:RCOM_0492540
description ethylene receptor, putative
nr
ID XP_002529316.1
description ethylene receptor, putative [Ricinus communis]
swissprot
ID Q0WPQ2
description Ethylene receptor 2 OS=Arabidopsis thaliana GN=ETR2 PE=1 SV=2
trembl
ID B9STJ7
description Ethylene receptor, putative OS=Ricinus communis GN=RCOM_0492540 PE=4 SV=1
Gene Ontology
ID GO:0005789
description ethylene receptor 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18149: 24303-28532
cDNA
(Sanger)
(ID:Location)		 019_H02.ab1: 27283-28532

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_020 0.0 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
2 Hb_000179_050 0.1058509889 - - 40S ribosomal protein S17A [Hevea brasiliensis]
3 Hb_000193_250 0.1194682229 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
4 Hb_000056_100 0.1198109334 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
5 Hb_000124_020 0.1242965553 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
6 Hb_000157_010 0.1275759904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
7 Hb_001123_230 0.1284414114 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
8 Hb_000622_310 0.1285366436 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
9 Hb_000935_050 0.128937293 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49710 [Jatropha curcas]
10 Hb_152439_020 0.1308107087 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
11 Hb_000186_240 0.1345500715 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
12 Hb_002498_060 0.1351533791 - - ATP binding protein, putative [Ricinus communis]
13 Hb_005333_130 0.1362306192 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010863_080 0.1371011041 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
15 Hb_119600_040 0.1381430807 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
16 Hb_002391_230 0.1386965045 - - hypothetical protein RCOM_0745080 [Ricinus communis]
17 Hb_000297_200 0.1389070804 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
18 Hb_004410_100 0.1394479232 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
19 Hb_005147_090 0.1402306918 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
20 Hb_001184_110 0.140897843 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001856_020 Hb_001856_020 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_000193_250 Hb_000193_250 Hb_001856_020--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_000157_010 Hb_000157_010 Hb_001856_020--Hb_000157_010 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230 Hb_006153_120 Hb_006153_120 Hb_000179_050--Hb_006153_120 Hb_007161_010 Hb_007161_010 Hb_000179_050--Hb_007161_010 Hb_000196_090 Hb_000196_090 Hb_000179_050--Hb_000196_090 Hb_002849_210 Hb_002849_210 Hb_000179_050--Hb_002849_210 Hb_005147_090 Hb_005147_090 Hb_000179_050--Hb_005147_090 Hb_152439_020 Hb_152439_020 Hb_000193_250--Hb_152439_020 Hb_004306_060 Hb_004306_060 Hb_000193_250--Hb_004306_060 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000500_040 Hb_000500_040 Hb_000056_100--Hb_000500_040 Hb_000056_100--Hb_000124_020 Hb_002890_280 Hb_002890_280 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_003861_080 Hb_003861_080 Hb_000056_100--Hb_003861_080 Hb_000622_310 Hb_000622_310 Hb_000124_020--Hb_000622_310 Hb_000124_020--Hb_010863_080 Hb_000124_020--Hb_000179_210 Hb_000116_470 Hb_000116_470 Hb_000124_020--Hb_000116_470 Hb_000124_020--Hb_005147_090 Hb_000157_010--Hb_152439_020 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_001123_230--Hb_005147_090 Hb_018790_060 Hb_018790_060 Hb_001123_230--Hb_018790_060 Hb_163145_020 Hb_163145_020 Hb_001123_230--Hb_163145_020 Hb_000997_400 Hb_000997_400 Hb_001123_230--Hb_000997_400 Hb_000297_200 Hb_000297_200 Hb_001123_230--Hb_000297_200 Hb_000061_420 Hb_000061_420 Hb_001123_230--Hb_000061_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5924 15.451 3.20502 11.4902 36.2693 27.2122
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7197 41.8732 73.924 23.7527 1.70909

CAGE analysis