Hb_006153_120

Information

Type -
Description -
Location Contig6153: 111466-114434
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00340g
description hypothetical protein
nr
ID KDP25637.1
description hypothetical protein JCGZ_20793 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JP15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20793 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_120 0.0 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
2 Hb_000179_050 0.0966804655 - - 40S ribosomal protein S17A [Hevea brasiliensis]
3 Hb_000671_150 0.1003659722 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
4 Hb_000086_570 0.1007164158 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_100506_010 0.1008545333 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
6 Hb_001881_020 0.1039650719 - - clathrin binding protein, putative [Ricinus communis]
7 Hb_000089_160 0.1047670555 - - 60S ribosomal protein L5B [Hevea brasiliensis]
8 Hb_001691_210 0.111230007 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_007672_010 0.1144541841 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
10 Hb_002078_450 0.116025062 - - nuclear transport factor, putative [Ricinus communis]
11 Hb_003226_280 0.1160499689 - - PREDICTED: peter Pan-like protein [Populus euphratica]
12 Hb_071736_020 0.1165156881 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
13 Hb_007161_010 0.1172320129 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
14 Hb_000608_420 0.1204010741 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
15 Hb_000196_090 0.1220680319 - - axonemal dynein light chain, putative [Ricinus communis]
16 Hb_000865_070 0.1233424906 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
17 Hb_000091_090 0.1233966455 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
18 Hb_029866_040 0.1246101412 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
19 Hb_000979_230 0.1259597647 - - PREDICTED: protein BCCIP homolog [Jatropha curcas]
20 Hb_002609_280 0.1277851665 - - villin 1-4, putative [Ricinus communis]

Gene co-expression network

sample Hb_006153_120 Hb_006153_120 Hb_000179_050 Hb_000179_050 Hb_006153_120--Hb_000179_050 Hb_000671_150 Hb_000671_150 Hb_006153_120--Hb_000671_150 Hb_000086_570 Hb_000086_570 Hb_006153_120--Hb_000086_570 Hb_100506_010 Hb_100506_010 Hb_006153_120--Hb_100506_010 Hb_001881_020 Hb_001881_020 Hb_006153_120--Hb_001881_020 Hb_000089_160 Hb_000089_160 Hb_006153_120--Hb_000089_160 Hb_001856_020 Hb_001856_020 Hb_000179_050--Hb_001856_020 Hb_007161_010 Hb_007161_010 Hb_000179_050--Hb_007161_010 Hb_000196_090 Hb_000196_090 Hb_000179_050--Hb_000196_090 Hb_002849_210 Hb_002849_210 Hb_000179_050--Hb_002849_210 Hb_005147_090 Hb_005147_090 Hb_000179_050--Hb_005147_090 Hb_000671_150--Hb_001881_020 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_000193_290 Hb_000193_290 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_002078_450 Hb_002078_450 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_021650_030 Hb_021650_030 Hb_000086_570--Hb_021650_030 Hb_001427_120 Hb_001427_120 Hb_000086_570--Hb_001427_120 Hb_001718_100 Hb_001718_100 Hb_000086_570--Hb_001718_100 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_100506_010--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_100506_010--Hb_001691_210 Hb_100506_010--Hb_000086_570 Hb_007672_010 Hb_007672_010 Hb_100506_010--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_100506_010--Hb_000261_460 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_020178_070 Hb_020178_070 Hb_001881_020--Hb_020178_070 Hb_001881_020--Hb_002411_200 Hb_001881_020--Hb_000086_570 Hb_000089_160--Hb_001691_210 Hb_000089_160--Hb_001718_100 Hb_000089_160--Hb_000086_570 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.727957 0.25473 0.0747839 0.42154 0.574737 0.808767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10934 1.23947 1.29161 0.763873 0.0369103

CAGE analysis