Hb_100506_010

Information

Type -
Description -
Location Contig100506: 624-2760
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20310g
description POPTRDRAFT_822434; hypothetical protein
nr
ID XP_011036034.1
description PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HT34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s20310g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00361: 881-2635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100506_010 0.0 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
2 Hb_000089_160 0.0777269095 - - 60S ribosomal protein L5B [Hevea brasiliensis]
3 Hb_001691_210 0.0940256928 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
4 Hb_000086_570 0.0945393609 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_007672_010 0.0956288602 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
6 Hb_006153_120 0.1008545333 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
7 Hb_000261_460 0.1017166055 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
8 Hb_071736_020 0.1039151294 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
9 Hb_001427_120 0.1048976081 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
10 Hb_002078_450 0.1051992119 - - nuclear transport factor, putative [Ricinus communis]
11 Hb_002527_070 0.1072037422 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_000196_090 0.1138841334 - - axonemal dynein light chain, putative [Ricinus communis]
13 Hb_000975_290 0.1140957257 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
14 Hb_002794_030 0.1149333862 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
15 Hb_002282_020 0.115479585 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
16 Hb_001718_100 0.1160092001 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
17 Hb_000671_150 0.1178000001 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
18 Hb_000317_030 0.1190855063 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
19 Hb_002326_030 0.1191648825 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
20 Hb_011794_070 0.1192696107 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_100506_010 Hb_100506_010 Hb_000089_160 Hb_000089_160 Hb_100506_010--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_100506_010--Hb_001691_210 Hb_000086_570 Hb_000086_570 Hb_100506_010--Hb_000086_570 Hb_007672_010 Hb_007672_010 Hb_100506_010--Hb_007672_010 Hb_006153_120 Hb_006153_120 Hb_100506_010--Hb_006153_120 Hb_000261_460 Hb_000261_460 Hb_100506_010--Hb_000261_460 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040 Hb_001691_210--Hb_001718_100 Hb_005997_010 Hb_005997_010 Hb_001691_210--Hb_005997_010 Hb_001691_210--Hb_003175_040 Hb_003020_230 Hb_003020_230 Hb_001691_210--Hb_003020_230 Hb_000205_270 Hb_000205_270 Hb_001691_210--Hb_000205_270 Hb_002078_450 Hb_002078_450 Hb_000086_570--Hb_002078_450 Hb_071736_020 Hb_071736_020 Hb_000086_570--Hb_071736_020 Hb_021650_030 Hb_021650_030 Hb_000086_570--Hb_021650_030 Hb_000086_570--Hb_001427_120 Hb_000086_570--Hb_001718_100 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_007101_130 Hb_007101_130 Hb_007672_010--Hb_007101_130 Hb_000376_050 Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_007672_010--Hb_002078_450 Hb_000179_050 Hb_000179_050 Hb_006153_120--Hb_000179_050 Hb_000671_150 Hb_000671_150 Hb_006153_120--Hb_000671_150 Hb_006153_120--Hb_000086_570 Hb_001881_020 Hb_001881_020 Hb_006153_120--Hb_001881_020 Hb_006153_120--Hb_000089_160 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.77981 0.857675 0.865154 1.70977 2.9161 5.33129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.4877 7.60496 7.08014 3.70941 0.252699

CAGE analysis