Hb_000261_460

Information

Type -
Description -
Location Contig261: 449600-451597
Sequence    

Annotation

kegg
ID rcu:RCOM_1019840
description 60S ribosomal protein L13a, putative
nr
ID ADR71263.1
description 60S ribosomal protein L13aA [Hevea brasiliensis]
swissprot
ID Q9FKC0
description 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1
trembl
ID I3NMM6
description 60S ribosomal protein L13aA OS=Hevea brasiliensis GN=RPL13aA PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l13a-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27317: 449682-451582
cDNA
(Sanger)
(ID:Location)		 006_K13.ab1: 449811-451581 , 008_D03.ab1: 449868-451578 , 009_I02.ab1: 449738-451582 , 011_P17.ab1: 449760-451578 , 021_B24.ab1: 449778-451582 , 023_L10.ab1: 451237-451554 , 027_C08.ab1: 450593-451582 , 033_D09.ab1: 449813-451576 , 034_J12.ab1: 449775-451576 , 036_F03.ab1: 449763-451582 , 040_O02.ab1: 449705-451582 , 046_E19.ab1: 449897-451581 , 047_D13.ab1: 449763-451581

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_460 0.0 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
2 Hb_005618_040 0.0736244363 - - -
3 Hb_000089_160 0.0851148563 - - 60S ribosomal protein L5B [Hevea brasiliensis]
4 Hb_000051_040 0.087561869 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
5 Hb_003680_070 0.0906108694 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
6 Hb_007021_020 0.0948636345 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_100506_010 0.1017166055 - - PREDICTED: uncharacterized protein LOC105133651 isoform X2 [Populus euphratica]
8 Hb_000865_070 0.1029025118 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
9 Hb_000086_570 0.1042306089 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_116349_170 0.1061449044 - - PREDICTED: uncharacterized protein LOC105649815 [Jatropha curcas]
11 Hb_000196_090 0.1077187596 - - axonemal dynein light chain, putative [Ricinus communis]
12 Hb_000085_300 0.1079245772 - - -
13 Hb_000032_220 0.1098112862 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
14 Hb_000030_100 0.1104114898 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
15 Hb_183963_020 0.1107917667 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
16 Hb_000922_270 0.1128089384 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
17 Hb_002078_460 0.1142768654 - - -
18 Hb_001427_120 0.1148114608 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
19 Hb_000479_180 0.1158130969 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004116_040 0.1172402539 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]

Gene co-expression network

sample Hb_000261_460 Hb_000261_460 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270 Hb_001691_210 Hb_001691_210 Hb_000089_160--Hb_001691_210 Hb_001718_100 Hb_001718_100 Hb_000089_160--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_000089_160--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_000089_160--Hb_001427_120 Hb_000030_100 Hb_000030_100 Hb_000089_160--Hb_000030_100 Hb_003175_040 Hb_003175_040 Hb_000089_160--Hb_003175_040 Hb_000051_040--Hb_007021_020 Hb_001711_030 Hb_001711_030 Hb_000051_040--Hb_001711_030 Hb_000051_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_003408_020 Hb_003408_020 Hb_000051_040--Hb_003408_020 Hb_001538_100 Hb_001538_100 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_007021_020--Hb_001427_120 Hb_100506_010--Hb_000089_160 Hb_100506_010--Hb_001691_210 Hb_100506_010--Hb_000086_570 Hb_007672_010 Hb_007672_010 Hb_100506_010--Hb_007672_010 Hb_006153_120 Hb_006153_120 Hb_100506_010--Hb_006153_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1137.42 198.223 102.367 135.65 633.645 1222.17
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2057.31 1957.18 1419.27 813.43 100.737

CAGE analysis