Hb_001153_200

Information

Type -
Description -
Location Contig1153: 166943-168988
Sequence    

Annotation

kegg
ID pmum:103337414
description calcium-dependent protein kinase 26-like
nr
ID XP_012087013.1
description PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
swissprot
ID Q38873
description Calcium-dependent protein kinase 7 OS=Arabidopsis thaliana GN=CPK7 PE=2 SV=1
trembl
ID A0A067JZT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20676 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04628: 166514-166750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001153_200 0.0 - - PREDICTED: calcium-dependent protein kinase 26 isoform X1 [Jatropha curcas]
2 Hb_005618_040 0.1023135964 - - -
3 Hb_007666_020 0.1258296711 - - alkaline phytoceramidase, putative [Ricinus communis]
4 Hb_025087_010 0.1266568102 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
5 Hb_009026_050 0.1386132338 - - vacuolar ATPase F subunit [Hevea brasiliensis]
6 Hb_002471_160 0.1395728325 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
7 Hb_000934_030 0.1439298784 - - -
8 Hb_000120_580 0.1466476035 - - hypothetical protein POPTR_0007s08570g [Populus trichocarpa]
9 Hb_001999_120 0.1476139752 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
10 Hb_000089_130 0.1480568889 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
11 Hb_000143_050 0.1484300558 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
12 Hb_001349_010 0.1489331404 - - -
13 Hb_183963_020 0.1490068082 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
14 Hb_001329_210 0.149069957 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
15 Hb_007229_060 0.1500088527 - - PREDICTED: pentatricopeptide repeat-containing protein At2g44880 [Jatropha curcas]
16 Hb_002540_030 0.1507300427 - - hypothetical protein 32 [Hevea brasiliensis]
17 Hb_000032_220 0.1508134933 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
18 Hb_000363_010 0.1509452844 - - -
19 Hb_000261_460 0.1526497808 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
20 Hb_001012_040 0.1533773687 - - PREDICTED: MADS-box transcription factor 23-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001153_200 Hb_001153_200 Hb_005618_040 Hb_005618_040 Hb_001153_200--Hb_005618_040 Hb_007666_020 Hb_007666_020 Hb_001153_200--Hb_007666_020 Hb_025087_010 Hb_025087_010 Hb_001153_200--Hb_025087_010 Hb_009026_050 Hb_009026_050 Hb_001153_200--Hb_009026_050 Hb_002471_160 Hb_002471_160 Hb_001153_200--Hb_002471_160 Hb_000934_030 Hb_000934_030 Hb_001153_200--Hb_000934_030 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_005618_040--Hb_007666_020 Hb_005618_040--Hb_025087_010 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270 Hb_007666_020--Hb_000922_270 Hb_002540_030 Hb_002540_030 Hb_007666_020--Hb_002540_030 Hb_002527_070 Hb_002527_070 Hb_007666_020--Hb_002527_070 Hb_001711_030 Hb_001711_030 Hb_007666_020--Hb_001711_030 Hb_002411_200 Hb_002411_200 Hb_007666_020--Hb_002411_200 Hb_183963_020 Hb_183963_020 Hb_025087_010--Hb_183963_020 Hb_001366_230 Hb_001366_230 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_000089_130 Hb_000089_130 Hb_009026_050--Hb_000089_130 Hb_009026_050--Hb_001366_230 Hb_000313_380 Hb_000313_380 Hb_009026_050--Hb_000313_380 Hb_002025_320 Hb_002025_320 Hb_009026_050--Hb_002025_320 Hb_009026_050--Hb_183963_020 Hb_010710_020 Hb_010710_020 Hb_002471_160--Hb_010710_020 Hb_001538_100 Hb_001538_100 Hb_002471_160--Hb_001538_100 Hb_002781_020 Hb_002781_020 Hb_002471_160--Hb_002781_020 Hb_075653_020 Hb_075653_020 Hb_002471_160--Hb_075653_020 Hb_003893_090 Hb_003893_090 Hb_002471_160--Hb_003893_090 Hb_001349_010 Hb_001349_010 Hb_000934_030--Hb_001349_010 Hb_042729_010 Hb_042729_010 Hb_000934_030--Hb_042729_010 Hb_000363_010 Hb_000363_010 Hb_000934_030--Hb_000363_010 Hb_004882_020 Hb_004882_020 Hb_000934_030--Hb_004882_020 Hb_002936_050 Hb_002936_050 Hb_000934_030--Hb_002936_050 Hb_000934_030--Hb_005618_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.10713 0.682249 0.127635 0.0432733 1.07694 1.41893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.14741 2.72878 2.03931 0.494351 0

CAGE analysis