Hb_075653_020

Information

Type -
Description -
Location Contig75653: 12209-13337
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_075653_020 0.0 - - -
2 Hb_001623_430 0.1385330609 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
3 Hb_005539_210 0.1482188189 - - -
4 Hb_002471_160 0.1489045317 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]
5 Hb_003680_070 0.152945164 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
6 Hb_008699_040 0.1553562694 - - -
7 Hb_001723_080 0.1565620958 - - hypothetical protein L484_026139 [Morus notabilis]
8 Hb_001629_100 0.1567564951 - - PREDICTED: uncharacterized protein LOC100252136 isoform X2 [Vitis vinifera]
9 Hb_001538_100 0.1575370902 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
10 Hb_003349_070 0.1578240572 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
11 Hb_012660_020 0.1602814949 - - -
12 Hb_001754_010 0.1648270104 - - translationally controlled tumor protein [Hevea brasiliensis]
13 Hb_010710_020 0.1690358043 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
14 Hb_030954_020 0.1726899637 - - hypothetical protein RCOM_1330200 [Ricinus communis]
15 Hb_000106_100 0.1759684571 - - -
16 Hb_000922_100 0.1768444168 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
17 Hb_010827_020 0.178695209 - - 60S ribosomal protein L17B [Hevea brasiliensis]
18 Hb_183086_040 0.1796952152 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
19 Hb_017895_030 0.1804292918 transcription factor TF Family: C2H2 -
20 Hb_000847_140 0.1810309047 - - -

Gene co-expression network

sample Hb_075653_020 Hb_075653_020 Hb_001623_430 Hb_001623_430 Hb_075653_020--Hb_001623_430 Hb_005539_210 Hb_005539_210 Hb_075653_020--Hb_005539_210 Hb_002471_160 Hb_002471_160 Hb_075653_020--Hb_002471_160 Hb_003680_070 Hb_003680_070 Hb_075653_020--Hb_003680_070 Hb_008699_040 Hb_008699_040 Hb_075653_020--Hb_008699_040 Hb_001723_080 Hb_001723_080 Hb_075653_020--Hb_001723_080 Hb_003349_070 Hb_003349_070 Hb_001623_430--Hb_003349_070 Hb_030954_020 Hb_030954_020 Hb_001623_430--Hb_030954_020 Hb_183086_040 Hb_183086_040 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_000300_400 Hb_000300_400 Hb_005539_210--Hb_000300_400 Hb_012395_210 Hb_012395_210 Hb_005539_210--Hb_012395_210 Hb_001012_040 Hb_001012_040 Hb_005539_210--Hb_001012_040 Hb_002492_020 Hb_002492_020 Hb_005539_210--Hb_002492_020 Hb_010594_030 Hb_010594_030 Hb_005539_210--Hb_010594_030 Hb_005539_210--Hb_001723_080 Hb_001153_200 Hb_001153_200 Hb_002471_160--Hb_001153_200 Hb_010710_020 Hb_010710_020 Hb_002471_160--Hb_010710_020 Hb_001538_100 Hb_001538_100 Hb_002471_160--Hb_001538_100 Hb_002781_020 Hb_002781_020 Hb_002471_160--Hb_002781_020 Hb_003893_090 Hb_003893_090 Hb_002471_160--Hb_003893_090 Hb_000261_460 Hb_000261_460 Hb_003680_070--Hb_000261_460 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_004474_010 Hb_004474_010 Hb_008699_040--Hb_004474_010 Hb_000847_140 Hb_000847_140 Hb_008699_040--Hb_000847_140 Hb_008699_040--Hb_001723_080 Hb_008699_040--Hb_005539_210 Hb_004680_020 Hb_004680_020 Hb_008699_040--Hb_004680_020 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001723_080--Hb_001012_040 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_001723_080--Hb_012395_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.38929 0.776599 0.0599364 0.422092 1.87996 3.73532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5167 8.62569 3.29965 3.52407 0

CAGE analysis