Hb_001722_040

Information

Type -
Description -
Location Contig1722: 77523-81645
Sequence    

Annotation

kegg
ID tcc:TCM_011026
description Mms zwei
nr
ID XP_012072292.1
description PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
swissprot
ID Q93YP0
description Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1
trembl
ID A0A067KPG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04749 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16225: 77630-81486 , PASA_asmbl_16226: 78880-81486
cDNA
(Sanger)
(ID:Location)		 001_K21.ab1: 77630-81421 , 049_A15.ab1: 77637-80293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_040 0.0 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
2 Hb_183963_020 0.0738113041 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
3 Hb_025087_010 0.0774459327 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
4 Hb_001999_120 0.0925380632 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
5 Hb_001366_230 0.0938489254 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002447_030 0.0940594012 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
7 Hb_003038_180 0.0943500762 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
8 Hb_000143_050 0.0990210727 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
9 Hb_008695_190 0.0993356369 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
10 Hb_001153_080 0.1033650602 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]
11 Hb_003581_090 0.1043311772 - - PREDICTED: galactose oxidase [Jatropha curcas]
12 Hb_000085_300 0.1045650488 - - -
13 Hb_000062_580 0.1087191696 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000787_070 0.1101747219 - - Early nodulin 55-2 precursor, putative [Ricinus communis]
15 Hb_000580_170 0.1112008778 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
16 Hb_000008_320 0.1114313792 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
17 Hb_002282_020 0.1152956389 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
18 Hb_002529_100 0.1157980426 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
19 Hb_012305_060 0.1161642558 - - protein translocase, putative [Ricinus communis]
20 Hb_001191_100 0.1161943468 - - F-actin capping protein beta subunit [Populus trichocarpa]

Gene co-expression network

sample Hb_001722_040 Hb_001722_040 Hb_183963_020 Hb_183963_020 Hb_001722_040--Hb_183963_020 Hb_025087_010 Hb_025087_010 Hb_001722_040--Hb_025087_010 Hb_001999_120 Hb_001999_120 Hb_001722_040--Hb_001999_120 Hb_001366_230 Hb_001366_230 Hb_001722_040--Hb_001366_230 Hb_002447_030 Hb_002447_030 Hb_001722_040--Hb_002447_030 Hb_003038_180 Hb_003038_180 Hb_001722_040--Hb_003038_180 Hb_183963_020--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001366_230 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_025087_010--Hb_001366_230 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_001999_120--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_001999_120--Hb_000062_580 Hb_001999_120--Hb_025087_010 Hb_005618_040 Hb_005618_040 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000008_320 Hb_000008_320 Hb_002447_030--Hb_000008_320 Hb_000045_190 Hb_000045_190 Hb_002447_030--Hb_000045_190 Hb_024650_020 Hb_024650_020 Hb_002447_030--Hb_024650_020 Hb_000634_050 Hb_000634_050 Hb_002447_030--Hb_000634_050 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_003038_180--Hb_000062_580 Hb_029584_140 Hb_029584_140 Hb_003038_180--Hb_029584_140 Hb_003540_230 Hb_003540_230 Hb_003038_180--Hb_003540_230 Hb_012522_030 Hb_012522_030 Hb_003038_180--Hb_012522_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
359.336 34.5512 34.8547 30.602 287.503 248.724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
647.969 497.674 315.39 60.6436 21.03

CAGE analysis