Hb_000926_290

Information

Type -
Description -
Location Contig926: 291801-292552
Sequence    

Annotation

kegg
ID rcu:RCOM_0753080
description hypothetical protein
nr
ID XP_002529468.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0753080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62698: 291821-292527 , PASA_asmbl_62702: 288623-319646
cDNA
(Sanger)
(ID:Location)		 003_I08.ab1: 291939-292440 , 032_O02.ab1: 291939-292440 , 037_B22.ab1: 291821-292477 , 041_A21.ab1: 291939-292436 , 047_P13.ab1: 291821-292477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003226_150 0.0939447994 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]
3 Hb_002529_100 0.0991732988 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
4 Hb_003581_090 0.10249326 - - PREDICTED: galactose oxidase [Jatropha curcas]
5 Hb_000008_320 0.1051422503 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
6 Hb_008695_190 0.1053710261 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
7 Hb_000521_150 0.1096114487 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
8 Hb_004012_010 0.1114814045 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
9 Hb_002235_400 0.1119663742 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
10 Hb_001999_120 0.1124411356 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
11 Hb_000062_580 0.1143962802 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000282_060 0.1172829095 - - PREDICTED: uncharacterized protein LOC105638155 [Jatropha curcas]
13 Hb_092706_020 0.1174315778 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
14 Hb_024835_030 0.1180643008 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
15 Hb_003050_230 0.11819542 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000116_470 0.1183541494 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
17 Hb_005455_070 0.1184243364 - - hypothetical protein POPTR_0001s04440g [Populus trichocarpa]
18 Hb_003777_180 0.1193118188 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
19 Hb_000412_110 0.1195675253 - - Rop4 [Hevea brasiliensis]
20 Hb_006775_080 0.121043284 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_290 Hb_000926_290 Hb_003226_150 Hb_003226_150 Hb_000926_290--Hb_003226_150 Hb_002529_100 Hb_002529_100 Hb_000926_290--Hb_002529_100 Hb_003581_090 Hb_003581_090 Hb_000926_290--Hb_003581_090 Hb_000008_320 Hb_000008_320 Hb_000926_290--Hb_000008_320 Hb_008695_190 Hb_008695_190 Hb_000926_290--Hb_008695_190 Hb_000521_150 Hb_000521_150 Hb_000926_290--Hb_000521_150 Hb_003226_150--Hb_000521_150 Hb_000282_060 Hb_000282_060 Hb_003226_150--Hb_000282_060 Hb_006569_020 Hb_006569_020 Hb_003226_150--Hb_006569_020 Hb_003226_150--Hb_002529_100 Hb_003226_150--Hb_008695_190 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_000045_190 Hb_000045_190 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_092706_020 Hb_092706_020 Hb_003581_090--Hb_092706_020 Hb_002291_030 Hb_002291_030 Hb_003581_090--Hb_002291_030 Hb_002759_230 Hb_002759_230 Hb_003581_090--Hb_002759_230 Hb_003581_090--Hb_002529_100 Hb_001722_040 Hb_001722_040 Hb_003581_090--Hb_001722_040 Hb_002447_030 Hb_002447_030 Hb_000008_320--Hb_002447_030 Hb_000008_320--Hb_002529_100 Hb_000085_200 Hb_000085_200 Hb_000008_320--Hb_000085_200 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230 Hb_000072_280 Hb_000072_280 Hb_008695_190--Hb_000072_280 Hb_025087_010 Hb_025087_010 Hb_008695_190--Hb_025087_010 Hb_001981_090 Hb_001981_090 Hb_008695_190--Hb_001981_090 Hb_001366_230 Hb_001366_230 Hb_008695_190--Hb_001366_230 Hb_000809_040 Hb_000809_040 Hb_008695_190--Hb_000809_040 Hb_004882_020 Hb_004882_020 Hb_008695_190--Hb_004882_020 Hb_000521_150--Hb_002529_100 Hb_000521_150--Hb_003581_090 Hb_000521_150--Hb_092706_020 Hb_000521_150--Hb_000045_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
682.864 158.67 36.2538 89.0312 243.119 382.374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
727.061 607.428 466.896 104.52 26.7853

CAGE analysis