Hb_034299_040

Information

Type -
Description -
Location Contig34299: 32774-34416
Sequence    

Annotation

kegg
ID rcu:RCOM_0699840
description aldo-keto reductase, putative (EC:2.3.1.170)
nr
ID XP_002520209.1
description aldo-keto reductase, putative [Ricinus communis]
swissprot
ID Q9SQ64
description Non-functional NADPH-dependent codeinone reductase 2 OS=Papaver somniferum GN=COR2 PE=1 SV=1
trembl
ID B9S2J0
description Aldo-keto reductase, putative OS=Ricinus communis GN=RCOM_0699840 PE=4 SV=1
Gene Ontology
ID GO:0016491
description non-functional nadph-dependent codeinone reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35807: 33144-33768 , PASA_asmbl_35808: 33318-33768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034299_040 0.0 - - aldo-keto reductase, putative [Ricinus communis]
2 Hb_002759_280 0.0981710667 - - PREDICTED: uncharacterized protein LOC105649824 [Jatropha curcas]
3 Hb_004440_100 0.1255017125 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
4 Hb_051407_010 0.1279133813 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
5 Hb_000398_190 0.1357187561 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
6 Hb_001252_080 0.1365970264 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
7 Hb_109168_010 0.1380250477 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
8 Hb_001484_120 0.1386927962 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]
9 Hb_002805_070 0.1427298426 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X2 [Jatropha curcas]
10 Hb_022256_040 0.143514739 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
11 Hb_000358_150 0.1443581706 - - hypothetical protein VITISV_012309 [Vitis vinifera]
12 Hb_004030_050 0.1507999021 - - PREDICTED: uncharacterized protein LOC105646691 [Jatropha curcas]
13 Hb_000057_040 0.1539617575 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_003030_020 0.154055971 - - PREDICTED: uncharacterized protein LOC105632544 [Jatropha curcas]
15 Hb_009838_100 0.1542556672 - - hypothetical protein RCOM_1217340 [Ricinus communis]
16 Hb_025814_010 0.1558491847 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
17 Hb_002508_020 0.1561990759 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
18 Hb_002027_120 0.1565508322 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
19 Hb_002701_080 0.1566588523 - - PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Jatropha curcas]
20 Hb_007943_130 0.1570543366 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_034299_040 Hb_034299_040 Hb_002759_280 Hb_002759_280 Hb_034299_040--Hb_002759_280 Hb_004440_100 Hb_004440_100 Hb_034299_040--Hb_004440_100 Hb_051407_010 Hb_051407_010 Hb_034299_040--Hb_051407_010 Hb_000398_190 Hb_000398_190 Hb_034299_040--Hb_000398_190 Hb_001252_080 Hb_001252_080 Hb_034299_040--Hb_001252_080 Hb_109168_010 Hb_109168_010 Hb_034299_040--Hb_109168_010 Hb_002027_120 Hb_002027_120 Hb_002759_280--Hb_002027_120 Hb_009838_100 Hb_009838_100 Hb_002759_280--Hb_009838_100 Hb_002759_280--Hb_001252_080 Hb_002196_020 Hb_002196_020 Hb_002759_280--Hb_002196_020 Hb_001001_060 Hb_001001_060 Hb_002759_280--Hb_001001_060 Hb_002874_070 Hb_002874_070 Hb_004440_100--Hb_002874_070 Hb_005730_030 Hb_005730_030 Hb_004440_100--Hb_005730_030 Hb_022256_040 Hb_022256_040 Hb_004440_100--Hb_022256_040 Hb_000369_060 Hb_000369_060 Hb_004440_100--Hb_000369_060 Hb_006091_030 Hb_006091_030 Hb_004440_100--Hb_006091_030 Hb_001584_110 Hb_001584_110 Hb_004440_100--Hb_001584_110 Hb_002805_070 Hb_002805_070 Hb_051407_010--Hb_002805_070 Hb_001484_120 Hb_001484_120 Hb_051407_010--Hb_001484_120 Hb_007904_220 Hb_007904_220 Hb_051407_010--Hb_007904_220 Hb_051407_010--Hb_109168_010 Hb_010436_020 Hb_010436_020 Hb_051407_010--Hb_010436_020 Hb_002701_080 Hb_002701_080 Hb_000398_190--Hb_002701_080 Hb_001504_160 Hb_001504_160 Hb_000398_190--Hb_001504_160 Hb_012654_010 Hb_012654_010 Hb_000398_190--Hb_012654_010 Hb_011612_010 Hb_011612_010 Hb_000398_190--Hb_011612_010 Hb_000230_330 Hb_000230_330 Hb_000398_190--Hb_000230_330 Hb_000041_220 Hb_000041_220 Hb_000398_190--Hb_000041_220 Hb_000358_150 Hb_000358_150 Hb_001252_080--Hb_000358_150 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_000676_110 Hb_000676_110 Hb_001252_080--Hb_000676_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001369_420 Hb_001369_420 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_000048_140 Hb_000048_140 Hb_109168_010--Hb_000048_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.37667 0.527866 0.957808 1.23931 5.33553 4.68794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47266 1.95108 3.80696 3.75874 0.50579

CAGE analysis