Hb_109168_010

Information

Type -
Description -
Location Contig109168: 9395-10330
Sequence    

Annotation

kegg
ID rcu:RCOM_0143720
description protein farnesyltransferase alpha subunit, putative (EC:2.5.1.59)
nr
ID XP_002534116.1
description protein farnesyltransferase alpha subunit, putative [Ricinus communis]
swissprot
ID O24304
description Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum GN=FTA PE=1 SV=1
trembl
ID B9T797
description Protein farnesyltransferase alpha subunit, putative OS=Ricinus communis GN=RCOM_0143720 PE=4 SV=1
Gene Ontology
ID GO:0005953
description protein farnesyltransferase geranylgeranyltransferase type-1 subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02797: 9192-11751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109168_010 0.0 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
2 Hb_007441_070 0.1063273138 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
3 Hb_002587_020 0.1071535277 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_011316_110 0.1121774073 - - PREDICTED: receptor-like serine/threonine-protein kinase At4g25390 [Jatropha curcas]
5 Hb_001504_160 0.1125724306 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
6 Hb_041091_010 0.1137397813 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
7 Hb_000048_140 0.1146841967 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
8 Hb_004440_100 0.1152450361 - - PREDICTED: transmembrane protein 53 [Jatropha curcas]
9 Hb_001959_050 0.1174726964 - - PREDICTED: uncharacterized protein LOC103323811 isoform X1 [Prunus mume]
10 Hb_000398_190 0.1186634685 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
11 Hb_000230_330 0.1189197703 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
12 Hb_008247_010 0.1194787598 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_000077_130 0.1197327039 - - PREDICTED: callose synthase 12 [Jatropha curcas]
14 Hb_007447_010 0.1200811279 - - PREDICTED: CBS domain-containing protein CBSCBSPB3 isoform X3 [Jatropha curcas]
15 Hb_000926_120 0.1214184954 - - PREDICTED: aspartic proteinase A1-like [Jatropha curcas]
16 Hb_002874_070 0.124090884 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
17 Hb_001584_110 0.124324956 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
18 Hb_007407_040 0.124895799 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_022256_040 0.1250681287 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
20 Hb_001484_120 0.1255034313 - - hypothetical protein POPTR_2287s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_109168_010 Hb_109168_010 Hb_007441_070 Hb_007441_070 Hb_109168_010--Hb_007441_070 Hb_002587_020 Hb_002587_020 Hb_109168_010--Hb_002587_020 Hb_011316_110 Hb_011316_110 Hb_109168_010--Hb_011316_110 Hb_001504_160 Hb_001504_160 Hb_109168_010--Hb_001504_160 Hb_041091_010 Hb_041091_010 Hb_109168_010--Hb_041091_010 Hb_000048_140 Hb_000048_140 Hb_109168_010--Hb_000048_140 Hb_000940_040 Hb_000940_040 Hb_007441_070--Hb_000940_040 Hb_011644_020 Hb_011644_020 Hb_007441_070--Hb_011644_020 Hb_019871_020 Hb_019871_020 Hb_007441_070--Hb_019871_020 Hb_001582_030 Hb_001582_030 Hb_007441_070--Hb_001582_030 Hb_001357_190 Hb_001357_190 Hb_007441_070--Hb_001357_190 Hb_000152_890 Hb_000152_890 Hb_007441_070--Hb_000152_890 Hb_001584_290 Hb_001584_290 Hb_002587_020--Hb_001584_290 Hb_008143_030 Hb_008143_030 Hb_002587_020--Hb_008143_030 Hb_002652_040 Hb_002652_040 Hb_002587_020--Hb_002652_040 Hb_030827_030 Hb_030827_030 Hb_002587_020--Hb_030827_030 Hb_008595_010 Hb_008595_010 Hb_002587_020--Hb_008595_010 Hb_007407_040 Hb_007407_040 Hb_002587_020--Hb_007407_040 Hb_007447_010 Hb_007447_010 Hb_011316_110--Hb_007447_010 Hb_001584_110 Hb_001584_110 Hb_011316_110--Hb_001584_110 Hb_002400_270 Hb_002400_270 Hb_011316_110--Hb_002400_270 Hb_000729_050 Hb_000729_050 Hb_011316_110--Hb_000729_050 Hb_022256_040 Hb_022256_040 Hb_011316_110--Hb_022256_040 Hb_000184_110 Hb_000184_110 Hb_011316_110--Hb_000184_110 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_041091_010--Hb_001584_110 Hb_000803_150 Hb_000803_150 Hb_041091_010--Hb_000803_150 Hb_001871_040 Hb_001871_040 Hb_041091_010--Hb_001871_040 Hb_000077_050 Hb_000077_050 Hb_041091_010--Hb_000077_050 Hb_041091_010--Hb_001504_160 Hb_041091_010--Hb_000076_080 Hb_028639_010 Hb_028639_010 Hb_000048_140--Hb_028639_010 Hb_002200_130 Hb_002200_130 Hb_000048_140--Hb_002200_130 Hb_000034_050 Hb_000034_050 Hb_000048_140--Hb_000034_050 Hb_003362_040 Hb_003362_040 Hb_000048_140--Hb_003362_040 Hb_000048_140--Hb_007407_040 Hb_000048_140--Hb_000230_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0456 18.6104 21.1968 19.097 120.204 111.897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.7141 26.5877 58.45 36.7933 21.2845

CAGE analysis