Hb_001357_190

Information

Type -
Description -
Location Contig1357: 128431-131838
Sequence    

Annotation

kegg
ID rcu:RCOM_0752600
description ribonuclease III, putative (EC:3.1.26.3)
nr
ID XP_002529460.1
description ribonuclease III, putative [Ricinus communis]
swissprot
ID Q9LTQ0
description Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana GN=RTL2 PE=1 SV=1
trembl
ID B9STZ1
description Ribonuclease III, putative OS=Ricinus communis GN=RCOM_0752600 PE=4 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 3-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09925: 130528-130641 , PASA_asmbl_09926: 130651-131537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_190 0.0 - - ribonuclease III, putative [Ricinus communis]
2 Hb_007441_070 0.0994986398 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
3 Hb_002405_020 0.0996414537 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
4 Hb_000395_140 0.1030400586 - - Oligopeptide transporter, putative [Ricinus communis]
5 Hb_002675_190 0.103491457 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_002149_040 0.1058725924 - - conserved hypothetical protein [Ricinus communis]
7 Hb_153547_010 0.1086662839 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
8 Hb_000331_480 0.1089332249 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
9 Hb_002725_070 0.1094110358 - - hypothetical protein PRUPE_ppa005949mg [Prunus persica]
10 Hb_000849_100 0.1114415966 - - PREDICTED: uncharacterized protein LOC105644134 [Jatropha curcas]
11 Hb_005295_040 0.1131729756 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
12 Hb_006029_010 0.1142885261 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
13 Hb_000152_890 0.1163469006 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
14 Hb_011644_020 0.1163993266 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
15 Hb_042083_070 0.1164357915 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_000392_280 0.1165218306 - - PREDICTED: pectinesterase 3 [Jatropha curcas]
17 Hb_003384_030 0.1173683345 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_003506_040 0.1180255494 - - hypothetical protein PHAVU_009G052500g [Phaseolus vulgaris]
19 Hb_117950_020 0.1183371254 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
20 Hb_004931_040 0.1189405213 - - splicing factor-related family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001357_190 Hb_001357_190 Hb_007441_070 Hb_007441_070 Hb_001357_190--Hb_007441_070 Hb_002405_020 Hb_002405_020 Hb_001357_190--Hb_002405_020 Hb_000395_140 Hb_000395_140 Hb_001357_190--Hb_000395_140 Hb_002675_190 Hb_002675_190 Hb_001357_190--Hb_002675_190 Hb_002149_040 Hb_002149_040 Hb_001357_190--Hb_002149_040 Hb_153547_010 Hb_153547_010 Hb_001357_190--Hb_153547_010 Hb_000940_040 Hb_000940_040 Hb_007441_070--Hb_000940_040 Hb_011644_020 Hb_011644_020 Hb_007441_070--Hb_011644_020 Hb_019871_020 Hb_019871_020 Hb_007441_070--Hb_019871_020 Hb_001582_030 Hb_001582_030 Hb_007441_070--Hb_001582_030 Hb_000152_890 Hb_000152_890 Hb_007441_070--Hb_000152_890 Hb_002405_020--Hb_002149_040 Hb_000771_160 Hb_000771_160 Hb_002405_020--Hb_000771_160 Hb_001016_060 Hb_001016_060 Hb_002405_020--Hb_001016_060 Hb_006173_020 Hb_006173_020 Hb_002405_020--Hb_006173_020 Hb_005410_010 Hb_005410_010 Hb_002405_020--Hb_005410_010 Hb_006029_010 Hb_006029_010 Hb_000395_140--Hb_006029_010 Hb_000395_140--Hb_002675_190 Hb_000395_140--Hb_000771_160 Hb_000208_290 Hb_000208_290 Hb_000395_140--Hb_000208_290 Hb_000161_030 Hb_000161_030 Hb_000395_140--Hb_000161_030 Hb_000331_480 Hb_000331_480 Hb_002675_190--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_001439_180 Hb_001439_180 Hb_002675_190--Hb_001439_180 Hb_001034_020 Hb_001034_020 Hb_002675_190--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_002149_040--Hb_001776_080 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_002149_040--Hb_006173_020 Hb_117950_020 Hb_117950_020 Hb_153547_010--Hb_117950_020 Hb_000317_440 Hb_000317_440 Hb_153547_010--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_153547_010--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_153547_010--Hb_004724_360 Hb_005295_040 Hb_005295_040 Hb_153547_010--Hb_005295_040 Hb_000318_140 Hb_000318_140 Hb_153547_010--Hb_000318_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2148 14.4955 4.5252 8.91707 73.7314 50.6875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1209 14.2995 18.7799 19.9448 2.23031

CAGE analysis